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Report for CCDS21211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21211.1 Public Mus musculus 7 Nr1h2 23 108 98 CCDS HistoryNCBI Gene:22260Re-query CCDS DB by CCDS ID:21211.1Re-query CCDS DB by GeneID:22260See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073488.11 ENSMUSP00000073188.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073488.11Link to Ensembl Protein Viewer:ENSMUSP00000073188.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073488Re-query CCDS DB by Protein ID:ENSMUSP00000073188
Original member Current member EBI ENSMUST00000107912.7 ENSMUSP00000103545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107912.7Link to Ensembl Protein Viewer:ENSMUSP00000103545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107912Re-query CCDS DB by Protein ID:ENSMUSP00000103545
Original member Current member EBI ENSMUST00000167197.7 ENSMUSP00000126788.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167197.7Link to Ensembl Protein Viewer:ENSMUSP00000126788.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167197Re-query CCDS DB by Protein ID:ENSMUSP00000126788
Original member NCBI NM_001285517.1 NP_001272446.1 Updated not alive Link to Nucleotide Sequence:NM_001285517.1Link to Protein Sequence:NP_001272446.1Re-query CCDS DB by Nucleotide ID:NM_001285517Re-query CCDS DB by Protein ID:NP_001272446
Current member NCBI NM_001285517.2 NP_001272446.1 Accepted alive Link to Nucleotide Sequence:NM_001285517.2Link to Protein Sequence:NP_001272446.1Re-query CCDS DB by Nucleotide ID:NM_001285517Re-query CCDS DB by Protein ID:NP_001272446Link to BLAST:NP_001272446.1
Original member NCBI NM_009473.3 NP_033499.1 Updated not alive Link to Nucleotide Sequence:NM_009473.3Link to Protein Sequence:NP_033499.1Re-query CCDS DB by Nucleotide ID:NM_009473Re-query CCDS DB by Protein ID:NP_033499
Current member NCBI NM_009473.4 NP_033499.1 Accepted alive Link to Nucleotide Sequence:NM_009473.4Link to Protein Sequence:NP_033499.1Re-query CCDS DB by Nucleotide ID:NM_009473Re-query CCDS DB by Protein ID:NP_033499Link to BLAST:NP_033499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272446.1 446 Q60644 446 100% 0 0
NP_033499.1 446 Q60644 446 100% 0 0

Chromosomal Locations for CCDS 21211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44549985 44550131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44550300 44550508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44550745 44550844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44551318 44551497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44551600 44551859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44551955 44552245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44552507 44552620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44552697 44552736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGTCTTCCCCCACAAGTTCTCTGGACACTCCCGTGCCTGGGAATGGTTCTCCTCAGCCCAGTACCTCCG
CCACGTCACCCACTATTAAGGAAGAGGGGCAGGAGACTGATCCTCCTCCAGGCTCTGAAGGGTCCAGCTC
TGCCTACATCGTGGTCATCTTAGAGCCAGAGGATGAGCCTGAGCGCAAGCGGAAGAAGGGGCCGGCCCCG
AAGATGCTGGGCCATGAGCTGTGCCGCGTGTGCGGAGACAAGGCTTCGGGCTTCCACTACAACGTGCTCA
GCTGTGAAGGCTGCAAAGGCTTCTTCCGGCGCAGTGTGGTCCACGGTGGGGCCGGGCGCTATGCCTGTCG
GGGCAGCGGAACCTGCCAGATGGATGCCTTCATGCGGCGCAAGTGCCAGCTCTGCCGGCTGCGCAAGTGC
AAGGAGGCTGGCATGCGGGAGCAGTGCGTGCTCTCTGAGGAGCAGATTCGGAAGAAAAGGATTCAGAAGC
AGCAACAGCAGCAGCCACCACCCCCATCTGAGCCAGCAGCCAGCAGCTCAGGCCGGCCAGCGGCCTCCCC
TGGCACTTCGGAAGCAAGCAGCCAGGGCTCCGGGGAAGGAGAGGGCATCCAGCTGACCGCGGCTCAGGAG
CTGATGATCCAGCAGTTAGTTGCCGCGCAGCTGCAGTGCAACAAACGATCTTTCTCCGACCAGCCCAAAG
TCACGCCCTGGCCCCTGGGTGCAGACCCTCAGTCCCGAGATGCCCGTCAGCAACGCTTTGCCCACTTCAC
CGAGCTAGCCATCATCTCGGTCCAGGAGATTGTGGACTTTGCCAAGCAGGTGCCAGGGTTCTTGCAGTTG
GGCCGGGAGGACCAGATCGCCCTCCTGAAGGCGTCCACCATTGAGATCATGTTGCTAGAAACAGCCAGAC
GCTACAACCACGAGACAGAATGCATCACGTTCCTGAAGGACTTCACCTACAGCAAGGACGACTTCCACCG
TGCAGGCTTGCAGGTGGAATTCATCAATCCCATCTTCGAGTTCTCGCGGGCCATGCGGCGGCTGGGCCTG
GACGATGCAGAGTATGCCTTGCTTATCGCCATCAACATCTTCTCAGCCGATCGGCCTAATGTGCAGGAGC
CCAGCCGTGTGGAGGCCCTGCAGCAGCCCTACGTGGAGGCGCTCCTCTCCTACACGAGGATCAAGCGCCC
ACAGGACCAGCTCCGCTTCCCACGCATGCTCATGAAGCTGGTGAGCCTGCGCACCCTCAGCTCCGTGCAC
TCGGAGCAGGTCTTTGCATTGCGACTCCAGGACAAGAAGCTGCCGCCCTTGCTGTCCGAGATCTGGGATG
TGCACGAGTAG

Translation (446 aa):
MSSPTSSLDTPVPGNGSPQPSTSATSPTIKEEGQETDPPPGSEGSSSAYIVVILEPEDEPERKRKKGPAP
KMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLCRLRKC
KEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPSEPAASSSGRPAASPGTSEASSQGSGEGEGIQLTAAQE
LMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQL
GREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGL
DDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVH
SEQVFALRLQDKKLPPLLSEIWDVHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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