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Report for CCDS21026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21026.1 Public Mus musculus 7 2310022A10Rik 23 108 98 CCDS HistoryNCBI Gene:66367Re-query CCDS DB by CCDS ID:21026.1Re-query CCDS DB by GeneID:66367See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067386.13 ENSMUSP00000066803.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067386.13Link to Ensembl Protein Viewer:ENSMUSP00000066803.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067386Re-query CCDS DB by Protein ID:ENSMUSP00000066803
Original member Current member NCBI NM_175107.5 NP_780316.3 Accepted alive Link to Nucleotide Sequence:NM_175107.5Link to Protein Sequence:NP_780316.3Re-query CCDS DB by Nucleotide ID:NM_175107Re-query CCDS DB by Protein ID:NP_780316Link to BLAST:NP_780316.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780316.3 413 Q8R3Y5-1 413 99.0315% 0 4

Chromosomal Locations for CCDS 21026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27556490 27556534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27560552 27560603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27564486 27564573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27564660 27564774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27565647 27565728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27571564 27571701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27574591 27574740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27578713 27578783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27580337 27580837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGGCTTCAGAATCGGAGAGAACTTGCTTTTCAATCTCAGAAAGGCTCCAGGAAGCAGGGTCAAGGCCA
GGAAGACGATGGTCTCAGTGACTATGGCCACTTCCGAGTGGATCCAGTTCTTCAAGGAAGCCGGCATTCC
CCCAGGACCTGCTGTTAATTACGCTGTGATGTTTGTGGATAATCGGATCCAGAAGAGCATGCTGCTAGAT
CTTAATAAAGAAATCATGAACGAGCTGGGTGTGACCGTCGTGGGTGATATCATTGCCATCCTCAAGCATG
CCAAGGTGGTACACCGCCAGGACATGTGCAAAGCAGCCACTGAGTCAGTGCCCTGCAACCCCAGCCCGCT
CCAGGGTGAGCTTCGCCGAGGCGCTTCTAGTGCCGCTTCTCGAATGATTGCCAACAGCCTGAACCATGAC
TCTCCACCCCATACCCCCACACGGCGGTCAGACAACAGCACCTCCAAGATCTCCGTCACTGTGTCCAACA
AGATGGCAGCGAAGAGTGCCAAGGCTGCCGCTCTGGCCCACAGGGAGGAGGAAAGCCTGGTTGTTCCCAC
CAAGCGGCGGCGGGTCACGGCTGAGATGGAGGGAAAGTACATCATCCACATGCCCAAGGGGACCACGCCC
CGCACCCGGAAGATCCTGGAGCAGCAGCAGGCAGCAAAAGGTCTCCATAGAACATCTGTGTTTGATCGCC
TTGGTGCTGAGTCCAAAGCAGACACGACCACAGGGACTAAGCCCACAGGAGTTTTCAGCCGCTTAGGGGC
CACCCCAGAGATGGATGAGGATCTGGCCTGGGACAGTGACAATGACAGCAGCAGTAGCTCTGTCCTGCAG
TATGCTGGGGTCCTGAAGAAACTAGGACGAGGCCCAACCAAGGCCAGTGCCCAACCAGCACTGACTGTCA
AAGCCAAGGCCACAAGCTCTGCAACCACCACAGCTACCACTCCAAAGCTGCGGCGCCTGGCACTTCCCTC
TCGCCCTGGGCTGGAGAAGAAGCCGGATTCCCTGCCCAAAGTCAGCATCCTTCAGAGACTGGGCAAGGCT
GCCGTTGTGTCCGAGGCACAGGACAGCCAGGTCACAAGCACCAAGAGTAAGTCCTCAGCTGAGGTCAAGT
TCGCCATTAAAAGGACTCTGGTAGGGCCCCGGGGGAGCAGCTCCAGCGAGAGCCTTGGTGCCCAGATGGA
CCATGCAGGCACTGTGAGCGTGTTCAAAAGACTGGGCCAAAGGACTTTCTAG

Translation (413 aa):
MGFRIGENLLFNLRKAPGSRVKARKTMVSVTMATSEWIQFFKEAGIPPGPAVNYAVMFVDNRIQKSMLLD
LNKEIMNELGVTVVGDIIAILKHAKVVHRQDMCKAATESVPCNPSPLQGELRRGASSAASRMIANSLNHD
SPPHTPTRRSDNSTSKISVTVSNKMAAKSAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTP
RTRKILEQQQAAKGLHRTSVFDRLGAESKADTTTGTKPTGVFSRLGATPEMDEDLAWDSDNDSSSSSVLQ
YAGVLKKLGRGPTKASAQPALTVKAKATSSATTTATTPKLRRLALPSRPGLEKKPDSLPKVSILQRLGKA
AVVSEAQDSQVTSTKSKSSAEVKFAIKRTLVGPRGSSSSESLGAQMDHAGTVSVFKRLGQRTF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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