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Report for CCDS20687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20687.1 Public Mus musculus 6 Cmas 23 108 98 CCDS HistoryNCBI Gene:12764Re-query CCDS DB by CCDS ID:20687.1Re-query CCDS DB by GeneID:12764See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032419.8 ENSMUSP00000032419.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032419.8Link to Ensembl Protein Viewer:ENSMUSP00000032419.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032419Re-query CCDS DB by Protein ID:ENSMUSP00000032419
Original member NCBI NM_009908.2 NP_034038.2 Updated not alive Link to Nucleotide Sequence:NM_009908.2Link to Protein Sequence:NP_034038.2Re-query CCDS DB by Nucleotide ID:NM_009908Re-query CCDS DB by Protein ID:NP_034038
Current member NCBI NM_009908.3 NP_034038.2 Accepted alive Link to Nucleotide Sequence:NM_009908.3Link to Protein Sequence:NP_034038.2Re-query CCDS DB by Nucleotide ID:NM_009908Re-query CCDS DB by Protein ID:NP_034038Link to BLAST:NP_034038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034038.2 432 Q99KK2-1 432 99.7685% 0 1

Chromosomal Locations for CCDS 20687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142756773 142757026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142764287 142764429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142764554 142764709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142767804 142767937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142770523 142770617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142771166 142771337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142772115 142772268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142775150 142775340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGACGCGCTGGAGAAGGGGGCCGCCACGTCGGGGCCCGCCCCGCGTGGACGGCCGTCCCGGGGCCGGC
CCCCGAAGCTGCAGCGCAGCCGGGGCGCGGGGCGCGGCCTAGAGAAGCCGCCGCACCTGGCAGCGCTGGT
GCTGGCCCGCGGCGGCAGCAAAGGCATCCCACTGAAGAACATCAAGCGCCTGGCGGGGGTTCCGCTCATT
GGCTGGGTCCTGCGCGCCGCCCTGGATGCGGGGGTCTTCCAGAGTGTGTGGGTTTCAACAGACCATGATG
AAATTGAGAATGTGGCCAAACAGTTTGGTGCACAGGTCCATCGAAGAAGTTCTGAAACGTCCAAAGACAG
CTCTACCTCACTAGACGCCATTGTAGAATTCCTGAATTATCACAATGAGGTTGACATTGTGGGGAATATC
CAAGCCACATCTCCATGTTTACATCCCACTGACCTCCAGAAAGTTGCAGAAATGATCCGAGAAGAAGGAT
ATGACTCTGTCTTCTCCGTTGTGAGGCGCCATCAGTTTCGATGGAGTGAAATTCAGAAAGGAGTTCGTGA
AGTGACTGAGCCTCTGAACTTGAATCCAGCGAAACGGCCTCGTCGACAAGACTGGGATGGAGAGTTATAT
GAGAACGGCTCATTTTATTTTGCTAAAAGACATTTGATAGAGATGGGTTACTTACAGGGTGGGAAAATGG
CATATTATGAAATGCGAGCTGAGCACAGTGTGGATATCGACGTGGACATCGATTGGCCGATCGCAGAGCA
AAGAGTTCTGAGATTTGGCTATTTTGGAAAAGAGAAGCTGAAGGAGATAAAGCTTTTGGTTTGTAATATT
GATGGATGTCTCACCAATGGCCACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTATGATGTAA
AAGACGCTATTGGCATAAGTTTATTAAAGAAAAGCGGTATTGAGGTGAGGCTCATCTCAGAACGGGCCTG
CTCCAAGCAGACGCTCTCTGCCCTAAAGCTGGACTGTAAAACAGAAGTCAGTGTGTCCGATAAGCTGGCC
ACCGTGGATGAGTGGAGGAAGGAGATGGGCCTGTGCTGGAAAGAAGTGGCCTATCTCGGCAATGAAGTGT
CTGATGAAGAATGCCTCAAGAGAGTGGGCCTGAGCGCTGTTCCTGCCGACGCCTGCTCCGGGGCCCAGAA
GGCTGTGGGGTACATCTGCAAATGCAGCGGTGGCCGGGGAGCCATCCGCGAGTTTGCAGAGCACATTTTC
CTACTGATAGAAAAAGTTAATAACTCATGCCAAAAATAG

Translation (432 aa):
MDALEKGAATSGPAPRGRPSRGRPPKLQRSRGAGRGLEKPPHLAALVLARGGSKGIPLKNIKRLAGVPLI
GWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNI
QATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELY
ENGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGYFGKEKLKEIKLLVCNI
DGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISERACSKQTLSALKLDCKTEVSVSDKLA
TVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPADACSGAQKAVGYICKCSGGRGAIREFAEHIF
LLIEKVNNSCQK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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