NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20547.1 Public Mus musculus 6 Tapbpl 23 108 98 CCDS HistoryNCBI Gene:213233Re-query CCDS DB by CCDS ID:20547.1Re-query CCDS DB by GeneID:213233See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043422.7 ENSMUSP00000047105.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043422.7Link to Ensembl Protein Viewer:ENSMUSP00000047105.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043422Re-query CCDS DB by Protein ID:ENSMUSP00000047105
Original member Current member NCBI NM_145391.2 NP_663366.2 Accepted alive Link to Nucleotide Sequence:NM_145391.2Link to Protein Sequence:NP_663366.2Re-query CCDS DB by Nucleotide ID:NM_145391Re-query CCDS DB by Protein ID:NP_663366Link to BLAST:NP_663366.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663366.2 451 Q8VD31 451 100% 0 0

Chromosomal Locations for CCDS 20547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125224666 125224709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125224864 125224950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125226491 125226796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125228063 125228401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125230145 125230417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125230555 125230797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125231534 125231597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGGCTTGGAGCCCAGCTGGTATCTGCTGCTCTGTTTGGCTGTCTCTGGGGCAGCAGGGACTGACCCTC
CCACAGCGCCCACCACAGCAGAAAGACAGCGGCAGCCCACGGACATCATCTTAGACTGCTTCTTGGTGAC
AGAAGACAGGCACCGCGGGGCTTTTGCCAGCAGTGGGGACAGGGAGAGGGCCTTGCTTGTGCTGAAGCAG
GTACCAGTGCTGGATGATGGCTCCCTGGAAGGCATCACAGATTTCCAGGGGAGCACTGAGACCAAACAGG
ATTCACCTGTTATCTTTGAGGCCTCAGTGGACTTGGTACAGATTCCCCAGGCAGAGGCGTTGCTCCATGC
TGACTGCAGCGGGAAGGCAGTGACCTGCGAGATCTCCAAGTATTTCCTCCAGGCCAGACAAGAGGCCACT
TTTGAGAAAGCACATTGGTTCATCAGCAACATGCAGGTTTCTAGAGGTGGCCCCAGTGTCTCCATGGTGA
TGAAGACTCTAAGAGATGCTGAAGTTGGAGCTGTCCGGCACCCTACACTGAACCTACCTCTGAGTGCCCA
GGGCACAGTGAAGACTCAAGTGGAGTTCCAGGTGACATCAGAGACCCAAACCCTGAACCACCTGCTGGGG
TCCTCTGTCTCCCTGCACTGCAGTTTCTCCATGGCACCAGGCCTGGACCTCACTGGCGTGGAGTGGCGGC
TGCAGCATAAAGGCAGCGGCCAGCTGGTGTACAGCTGGAAGACAGGGCAGGGGCAGGCCAAGCGCAAGGG
CGCTACACTGGAGCCTGAGGAGCTACTCAGGGCTGGAAACGCCTCTCTCACCTTACCCAACCTCACTCTA
AAGGATGAGGGGAACTACATCTGCCAGATCTCCACCTCTCTGTATCAAGCTCAACAGATCATGCCACTTA
ACATCCTGGCTCCCCCCAAAATACAACTGCACTTGGCAAACAAGGATCCTCTGCCTTCCCTCGTCTGCAG
CATTGCCGGCTACTATCCTCTGGATGTGGGAGTGACGTGGATTCGAGAGGAGCTGGGTGGAATTCCAGCC
CAAGTCTCTGGTGCCTCCTTCTCCAGCCTCAGGCAGAGCACGATGGGAACCTACAGCATTTCTTCCACGG
TGATGGCTGACCCAGGCCCCACAGGTGCCACTTACACCTGCCAAGTCGCCCACGTCTCCCTGGAGGAGCC
CCTTACAACCAGCATGAGGGTTTTGCCAAATCCAGAGCAGAGAGGAACCTTGGGAGTCATCTTTGCCAGC
ATCATCTTCCTTTCTGCGCTGTTGTTGTTTCTGGGACTTCACAGACAGCAAGCTTCTTCATCAAGGTCCA
CCAGGCCTATGAGGCATTCTGGGTAG

Translation (451 aa):
MGLEPSWYLLLCLAVSGAAGTDPPTAPTTAERQRQPTDIILDCFLVTEDRHRGAFASSGDRERALLVLKQ
VPVLDDGSLEGITDFQGSTETKQDSPVIFEASVDLVQIPQAEALLHADCSGKAVTCEISKYFLQARQEAT
FEKAHWFISNMQVSRGGPSVSMVMKTLRDAEVGAVRHPTLNLPLSAQGTVKTQVEFQVTSETQTLNHLLG
SSVSLHCSFSMAPGLDLTGVEWRLQHKGSGQLVYSWKTGQGQAKRKGATLEPEELLRAGNASLTLPNLTL
KDEGNYICQISTSLYQAQQIMPLNILAPPKIQLHLANKDPLPSLVCSIAGYYPLDVGVTWIREELGGIPA
QVSGASFSSLRQSTMGTYSISSTVMADPGPTGATYTCQVAHVSLEEPLTTSMRVLPNPEQRGTLGVIFAS
IIFLSALLLFLGLHRQQASSSRSTRPMRHSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH