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Report for CCDS20452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20452.1 Public Mus musculus 6 Alox5 23 108 98 CCDS HistoryNCBI Gene:11689Re-query CCDS DB by CCDS ID:20452.1Re-query CCDS DB by GeneID:11689See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026795.12 ENSMUSP00000026795.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026795.12Link to Ensembl Protein Viewer:ENSMUSP00000026795.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026795Re-query CCDS DB by Protein ID:ENSMUSP00000026795
Original member Current member NCBI NM_009662.2 NP_033792.1 Accepted alive Link to Nucleotide Sequence:NM_009662.2Link to Protein Sequence:NP_033792.1Re-query CCDS DB by Nucleotide ID:NM_009662Re-query CCDS DB by Protein ID:NP_033792Link to BLAST:NP_033792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033792.1 674 P48999 674 100% 0 0

Chromosomal Locations for CCDS 20452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116410719 116410898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116412460 116412630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116413122 116413222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116413442 116413563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116413738 116413916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116414523 116414609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116415374 116415577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116420241 116420387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116423143 116423315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116424137 116424243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116427143 116427265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116448270 116448351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116454117 116454315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116460875 116461024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGCCCTCCTACACGGTCACCGTGGCCACCGGCAGCCAGTGGTTCGCGGGCACCGACGACTACATCTACC
TCAGCCTCATTGGCTCTGCGGGCTGTAGCGAGAAGCATCTGCTGGACAAGGCATTCTACAATGACTTCGA
ACGGGGCGCGGTGGACTCCTACGATGTCACCGTGGATGAGGAGCTGGGCGAGATCTACCTAGTCAAAATT
GAGAAGCGCAAATACTGGCTCCATGATGACTGGTACCTGAAGTACATCACACTGAAGACACCCCACGGGG
ACTACATCGAGTTCCCATGTTACCGCTGGATCACAGGCGAGGGCGAGATTGTCCTGAGGGATGGACGTGC
AAAATTGGCCCGAGATGACCAAATTCACATCCTCAAGCAGCACAGACGTAAAGAACTGGAGGCACGGCAA
AAACAGTATCGATGGATGGAGTGGAACCCCGGCTTCCCTTTGAGTATTGATGCCAAATGCCACAAGGATC
TGCCCCGAGATATCCAGTTTGATAGTGAAAAAGGAGTGGACTTTGTTCTGAACTACTCAAAAGCGATGGA
GAACCTGTTCATCAACCGCTTCATGCACATGTTCCAGTCTTCCTGGCACGACTTTGCTGACTTTGAGAAA
ATCTTCGTCAAAATCAGCAACACTATATCTGAGCGAGTCAAGAACCACTGGCAGGAAGACCTCATGTTTG
GCTACCAGTTCCTGAATGGCTGCAACCCAGTACTCATCAAGCGCTGCACAGCGTTGCCCCCGAAGCTCCC
AGTGACCACAGAGATGGTGGAGTGCAGCCTAGAGCGGCAGCTCAGTTTAGAACAGGAAGTACAGGAAGGG
AACATTTTCATCGTTGATTACGAGCTACTGGATGGCATCGATGCTAACAAAACTGACCCCTGTACACACC
AGTTCCTGGCTGCCCCCATCTGCCTGCTATATAAGAACCTAGCCAACAAGATTGTTCCCATTGCCATCCA
GCTCAACCAAACCCCTGGAGAGAGTAACCCAATCTTCCTCCCTACGGATTCAAAGTACGACTGGCTTTTG
GCCAAAATCTGGGTGCGTTCCAGTGACTTCCACGTCCATCAAACGATCACCCACCTTCTGCGCACGCATC
TGGTGTCTGAGGTGTTTGGTATCGCCATGTACCGCCAGCTGCCTGCTGTGCATCCCCTTTTCAAGCTGCT
GGTAGCCCATGTGAGGTTCACCATTGCTATCAACACTAAGGCCCGGGAACAGCTTATCTGCGAGTATGGC
CTTTTTGACAAGGCCAATGCCACCGGGGGTGGAGGGCACGTGCAGATGGTGCAGAGGGCTGTCCAGGATC
TGACCTATTCCTCCCTGTGTTTCCCGGAGGCCATCAAGGCCCGGGGCATGGACAGCACGGAAGACATCCC
CTTCTACTTCTATCGTGATGATGGACTGCTCGTGTGGGAGGCTATCCAGTCGTTCACAATGGAGGTGGTG
AGCATCTACTATGAGAACGACCAGGTGGTGGAGGAGGACCAGGAACTGCAGGACTTCGTGAAGGATGTTT
ACGTGTACGGCATGCGGGGCAAAAAGGCCTCAGGTTTCCCCAAGTCCATCAAGAGCAGGGAGAAGCTGTC
CGAGTACCTGACGGTGGTGATCTTCACGGCCTCTGCCCAGCATGCAGCTGTAAACTTCGGCCAGTATGAC
TGGTGCTCCTGGATCCCCAACGCTCCTCCAACTATGCGGGCCCCACCACCCACGGCCAAGGGTGTGGTCA
CCATCGAGCAGATCGTGGATACTCTACCAGACCGTGGCCGATCATGTTGGCATCTAGGTGCAGTGTGGGC
CTTGAGCCAGTTTCAAGAAAATGAGCTGTTTCTAGGCATGTACCCAGAGGAGCATTTCATTGAGAAGCCA
GTGAAGGAAGCCATGATCCGATTCCGCAAGAACCTGGAGGCCATCGTCAGCGTGATCGCCGAGCGCAATA
AGAACAAAAAGCTCCCCTACTACTACCTGTCACCAGACAGGATTCCCAACAGCGTAGCCATCTAA

Translation (674 aa):
MPSYTVTVATGSQWFAGTDDYIYLSLIGSAGCSEKHLLDKAFYNDFERGAVDSYDVTVDEELGEIYLVKI
EKRKYWLHDDWYLKYITLKTPHGDYIEFPCYRWITGEGEIVLRDGRAKLARDDQIHILKQHRRKELEARQ
KQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWHDFADFEK
IFVKISNTISERVKNHWQEDLMFGYQFLNGCNPVLIKRCTALPPKLPVTTEMVECSLERQLSLEQEVQEG
NIFIVDYELLDGIDANKTDPCTHQFLAAPICLLYKNLANKIVPIAIQLNQTPGESNPIFLPTDSKYDWLL
AKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLFKLLVAHVRFTIAINTKAREQLICEYG
LFDKANATGGGGHVQMVQRAVQDLTYSSLCFPEAIKARGMDSTEDIPFYFYRDDGLLVWEAIQSFTMEVV
SIYYENDQVVEEDQELQDFVKDVYVYGMRGKKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYD
WCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKP
VKEAMIRFRKNLEAIVSVIAERNKNKKLPYYYLSPDRIPNSVAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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