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Report for CCDS20411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20411.1 Public Mus musculus 6 Setd5 23 108 98 CCDS HistoryNCBI Gene:72895Re-query CCDS DB by CCDS ID:20411.1Re-query CCDS DB by GeneID:72895See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042889.11 ENSMUSP00000047398.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042889.11Link to Ensembl Protein Viewer:ENSMUSP00000047398.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042889Re-query CCDS DB by Protein ID:ENSMUSP00000047398
Original member Current member NCBI NM_028385.1 NP_082661.1 Accepted alive Link to Nucleotide Sequence:NM_028385.1Link to Protein Sequence:NP_082661.1Re-query CCDS DB by Nucleotide ID:NM_028385Re-query CCDS DB by Protein ID:NP_082661Link to BLAST:NP_082661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082661.1 1441 Q5XJV7-1 1441 100% 0 0

Chromosomal Locations for CCDS 20411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113105051 113105121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113109885 113109990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113110374 113110525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113110866 113110924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113111358 113111536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113114844 113115086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113115528 113115676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113116005 113116122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113116780 113116889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113117368 113117617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113118258 113118344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113119416 113119673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113120841 113121161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113121568 113121810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113128412 113128541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113137953 113138200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113143613 113144083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113147440 113147738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113149555 113149688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113150102 113150190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113150862 113151470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4326 nt):
ATGAGCATTGCAATCCCTCTGGGAGTCACCACACCAGATACTTCCTACTCAGATATGGCTGCTGGATCAG
ACCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGAC
CACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTG
CCGTCGCCCGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAGACTGTTCCTACCTGGTGTC
CTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGT
TATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGAT
GAGGAGCTTTCTCCTTCCACTGTGTTGTACACAGCAACACAGCACACACCTACAAGCATCACCTTAACTG
TTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAA
GATCAAGAATTCTCCCTCGGAAGCACAGAATTTAGATGAAAATACCACTGAGGGCTGGGAAAATCGGATA
AGACTATGGACTGATCAATATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAATGCCCTTG
AGCAACATCTCCATTCTAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGACACTATTAATAAAACTGA
ACTGGCCTGTAATAATACAGTAATCGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAA
AAGCACCGGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAATATCGTGGGA
AAGTCATGTTACGACAACAATTTGAGGTCAATGGGCATTTCTTTAAAAAACCATATCCCTTTGTGCTCTT
CTACTCAAAATTCAATGGTGTAGAGATGTGTGTCGATGCTCGTACTTTCGGTAATGATGCTCGGTTCATC
AGAAGATCATGTACACCAAATGCAGAGGTGAGACACATGATTGCAGATGGGATGATTCACTTGTGTATCT
ATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTTGATTATGAATATAGTAACTGTAA
TTACAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAATTGCCCTATACAGAAAAGAAATCCCAATGCT
GCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGAAAAGCAC
GGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGA
AGTTCCAGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAA
GAAGAAAAAGAAGAGGCTACAGATGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCGAGAAGACCGAA
AGGTTGAAGCCATCATGCATGCTTTTGAATCTTTAGAGAAGAGAAAGAAACGGCGGGATCAGCCTGTAGA
ACAGAGCAGCTCGGACATAGAGATTACTACTAGCAGTTCAGAGATAGTAGTTGGAGAAGAGACAAAAACT
GCAGCCCCTGAGTCTGAAGTTAGCAGCCCTGTTTCAAATGTTGCTATCCCAAGCACCCCACAGAGCACTG
GTGTGAATACTCGGAGGTCCTCCCATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCTCC
AGCTAAGCCTTCTAGACCCCGACCGAAAAGTAGAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTA
AAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAGGAAGTA
ACAACTCAGTAACTCCTCCTGAAGCTGGAAATACAGACAGTTCAGGAGAGAACAGACAGCTAACAGGGTC
TGACCCAACTGTGATATCAGTTACTGGATCCCATGTCAACCGTGCTGCATCTAAATACCCCAAAACCAAA
AAGTATCTAGTTACAGAATGGTTAAATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGAGTGTCCTTTGC
GTATCACCACTGACCCAACTGTGTTGGCAACAACCCTGAACATGCTACCAGGTCTTATTCATTCCCCATT
AATTTGTACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATGCCTGAGAGGCGTCGAAGGCCC
CTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGGGATGA
CTCAGACTTCATCTGTGCCCCAAGAGACTAGAACACAGCACCTATACCAAAGTAATGAGACTAGTAATTC
TTCTAGTATCTGTAAAGACAATGCAGACTTACTGAGCCCATTAAAGAAATGGAAGTCTCGCTATCTGATG
GAGCAGAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCACCCAGCTCAGGCTCAA
AGAGTCCCCAGCTGACCACACCTGGCCAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCT
CATGTTCTCACCAATCACATCTCTTACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTTTGAGCTTTGT
CACCGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAGGC
CCTCCCTGCTTAACTGCAATCATCCTGACCTGGCTTCTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGG
CTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGAG
TTCAATTTGATGTACGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTC
CCTTGGTGGGAGACAGGAAGCCTTTACATTTAGATGGAGGATATTGTTCCCCTGCTGAAGGCTTTTCCAG
CAGATATGAACATGGCTTTATGAAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGT
GAAGGAGTCCCATCTGCTCCTCAGAACCCACCGCAAAGGAAAAAGGTATCCTTGCTAGAGTACCGCAAAA
GAAAACAAGAAGCTAAGGAGAATTCTGGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGG
AGCTGGGCAAGGCAGCAGTAACTCTGTTTCTGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGGA
ACCCCGTCATCCCCTCACAAAAAATTTTCCCCGTCTCATTCCTCTGCATCGCATTTGGAGGCGGTAAGCC
CGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGCAGACCTCAAGAAAACATCAGCAGTAGGTGGATGGT
TCCTACATCAGTTGAACGACTCCGAGAAGGAGGTAGCATCCCTAAGGTTCTTCGAAGCAGTGTGAGAGTT
GCCCAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAACATCACAGAGAAAGAGTCAGACCCTGCAGATG
GAGAAGGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGAGCAACTGTTTACAGCCCTTCCAGATATAG
CTACCAGCTCCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCC
TTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGGAAACCCTC
CCTCTCACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCTACCCCAGCCCTGCCCACCCTGTGTCTAC
AGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCGCATTCTGGAAACAGCACT
GGCAGCAATCTTCCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCTACCCCACAGGGCCCCTCAGACT
CACCGACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTCCTCAGAACTC
TAGGTCTTCATTGCCATCAGACTTACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGCTGCCTACCAG
GCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACATCGTGGTAGTGGGGGTGTACACCAGT
ACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGACTTTCCTAG

Translation (1441 aa):
MSIAIPLGVTTPDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGL
PSPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWD
EELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPEKGRAAPKTKKIKNSPSEAQNLDENTTEGWENRI
RLWTDQYEEAFTNQYSADVQNALEQHLHSNKEFVGKPAILDTINKTELACNNTVIGSQMQLQLGRVTRVQ
KHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFI
RRSCTPNAEVRHMIADGMIHLCIYAVSAITKDAEVTIAFDYEYSNCNYKVDCACHKGNRNCPIQKRNPNA
AELPLPPPPSFPTIGAETRRRKARRKELELEQQNEVPEENPDPQPQEVPEKVTVSNEHEEVDNPEEKPEE
EEKEEATDDQENSAHSRRTREDRKVEAIMHAFESLEKRKKRRDQPVEQSSSDIEITTSSSEIVVGEETKT
AAPESEVSSPVSNVAIPSTPQSTGVNTRRSSHAGDVAAEKPIPKPPPAKPSRPRPKSRISRYRTSSAQRL
KRQKQAIAQQAELSQAALEEGGSNNSVTPPEAGNTDSSGENRQLTGSDPTVISVTGSHVNRAASKYPKTK
KYLVTEWLNDKAEKQECPVECPLRITTDPTVLATTLNMLPGLIHSPLICTTPKHYIRFGSPFMPERRRRP
LLPDGTFSSCKKRWIKQALEEGMTQTSSVPQETRTQHLYQSNETSNSSSICKDNADLLSPLKKWKSRYLM
EQNITKLLQPLSPVTPPPPSSGSKSPQLTTPGQTHPGEEECRNGYSLMFSPITSLTTASRSNTPLQFELC
HRKDLDLTKVGFPDSSTHSCADRPSLLNCNHPDLASHPSVVPTSEAGFPSRSGDGPQTLLRNSDQAFRTE
FNLMYAYSPLNAMPRADGLYRGSPLVGDRKPLHLDGGYCSPAEGFSSRYEHGFMKDLSRGSMSPGGERTC
EGVPSAPQNPPQRKKVSLLEYRKRKQEAKENSGGGNDSSQSKSKSSGAGQGSSNSVSDTGAHGVQGSSAG
TPSSPHKKFSPSHSSASHLEAVSPSDSRGTSSSHCRPQENISSRWMVPTSVERLREGGSIPKVLRSSVRV
AQKGEPSPTWESNITEKESDPADGEGPEPLSSALSKGATVYSPSRYSYQLLQCDSPRTESQSLLQQSSSP
FRGHPTQSPGYSYRTTALRPGNPPSHGSSESSLSSTSYPSPAHPVSTDSLAPFTGTPGYYSSQPHSGNST
GSNLPRRSCSSSAASPTPQGPSDSPTSDSVSQSSTGTLSSTSFPQNSRSSLPSDLRTISLPNAGQSAAYQ
ASRVSAVSNSQHYPHRGSGGVHQYRLQPLQGSGVKTQTGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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