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Report for CCDS20264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20264.1 Public Mus musculus 6 Sema4f 23 108 98 CCDS HistoryNCBI Gene:20355Re-query CCDS DB by CCDS ID:20264.1Re-query CCDS DB by GeneID:20355See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20264.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000641.14 ENSMUSP00000000641.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000641.14Link to Ensembl Protein Viewer:ENSMUSP00000000641.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000000641Re-query CCDS DB by Protein ID:ENSMUSP00000000641
Original member NCBI NM_011350.4 NP_035480.3 Updated not alive Link to Nucleotide Sequence:NM_011350.4Link to Protein Sequence:NP_035480.3Re-query CCDS DB by Nucleotide ID:NM_011350Re-query CCDS DB by Protein ID:NP_035480
Current member NCBI NM_011350.5 NP_035480.3 Accepted alive Link to Nucleotide Sequence:NM_011350.5Link to Protein Sequence:NP_035480.3Re-query CCDS DB by Nucleotide ID:NM_011350Re-query CCDS DB by Protein ID:NP_035480Link to BLAST:NP_035480.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035480.3 777 Q9Z123 777 100% 0 0

Chromosomal Locations for CCDS 20264.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 82913491 82914104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82914367 82914425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82917322 82917482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82917589 82917698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82917823 82918045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82918184 82918331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82918532 82918710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82919317 82919468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82919563 82919682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82930898 82930991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82935587 82935685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82935895 82935954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82937061 82937212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82939461 82939623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGCTGGCCAGGGCCGAGCGGCCCCGCCCGGGCCCCCGGCCGCCTCCGGTCTCTCTCTTCCCGCCGCCGT
CG
TCGCTGCTGCTGCTGCTGCTGGCGATGCTGAGCGCCCCGGTGTGCGGCCGCGTCCCCCGCTCGGTGCC
C
AGAACCTCGCTGCCCATCTCCGAGGCTGACTCCTATCTCACCCGGTTTGCGGCCCCTCATACGTACAAT
TAC
TCTGCTCTCCTGGTGGATCCTGCTTCTCACACACTTTACGTCGGTGCACGGGACAGCATCTTCGCTT
TA
ACCCTGCCCTTCTCTGGGGAAAAGCCTCGAAGGATCGACTGGATGGTGCCCGAGACTCACAGACAGAA
C
TGTAGGAAGAAAGGCAAGAAAGAGGACGAATGTCACAATTTTATCCAGATTCTCGCCATTGCCAATGCC
TCT
CACCTCCTCACGTGTGGCACCTTCGCTTTTGATCCGAAGTGCGGGGTTATTGATGTGTCCAGTTTCC
AG
CAGGTTGAAAGACTTGAGAGTGGCCGGGGGAAATGTCCTTTTGAGCCAGCTCAACGGTCAGCAGCTGT
A
ATGGCTGGGGGCGTCCTCTACACCGCCACTGTGAAAAACTTCCTGGGGACAGAGCCGATTATCTCCCGA
GCT
GTGGGTCGAGCTGAGGACTGGATTCGAACAGAGACCTTGTCATCCTGGCTTAATGCCCCAGCCTTTG
TC
GCAGCTATGGTCCTGAGCCCGGCTGAGTGGGGGGATGAAGATGGAGACGATGAAATCTTCTTTTTCTT
C
ACGGAGACCTCCCGAGTCTTGGACTCATATGAGCGCATCAAGGTCCCACGAGTGGCCCGTGTGTGTGCG
GGG
GACCTTGGGGGCCGGAAGACCCTTCAGCAGAGATGGACGACGTTTCTAAAGGCTGACCTGCTGTGTC
CA
GGGCCCGAGCATGGAAGGGCCTCGGGGGTTCTGCAGGATATGACAGAGCTTCGACCTCAGCCTGGCGC
G
GGGACCCCCCTCTTTTATGGCATCTTTTCCTCCCAGTGGGAAGGAGCCGCCATTTCTGCTGTGTGTGCC
TTC
CGACCCCAAGACATCCGGGCAGTGCTGAATGGTCCCTTTAGAGAGCTAAAACATGACTGCAACAGGG
GA
CTACCTGTCATGGACAACGAGGTGCCCCAGCCCAGACCTGGAGAGTGCATCACCAACAACATGAAGTT
C
CAGCAGTTTGGATCCTCACTCTCCCTGCCAGACCGTGTGCTCACCTTTATCAGAGACCACCCGCTCATG
GAC
AGGCCCGTGTTTCCAGCTGATGGCCGCCCCCTGCTGGTCACTACGGATACAGCCTATCTCAGAGTTG
TG
GCTCACCGGGTGACCAGCCTCTCAGGGAAAGAATATGATGTGCTCTACCTGGGGACAGAGGATGGGCA
C
CTCCATCGGGCTGTGCGCATCGGAGCTCAGCTCAGTGTCCTGGAGGATCTGGCCTTGTTCCCGGAAACA
CAG
CCGGTTGAAAGCATGAAATTGTACCATGATTGGCTTCTGGTGGGCTCCCATACTGAGGTGACACAAG
TG
AACACCAGCAACTGTGGCCGTCTCCAGAGCTGCTCAGAATGTATCCTGGCCCAGGATCCCGTGTGTGC
C
TGGAGCTTCCGGCTCGATGCTTGTGTGGCCCATGCAGGCGAGCACCGTGGGATGGTTCAAGACATAGAG
TCA
GCAGATGTCTCTTCTTTGTGTCCAAAAGAACCTGGAGAACATCCGGTAGTGTTTGAAGTTCCAGTGG
CT
ACGGTGGGCCACGTGGTCCTGCCGTGCTCCCCCAGTTCTGCCTGGGCATCCTGTGTGTGGCACCAGCC
C
AGTGGAGTGACTTCGCTCACCCCACGAAGGGATGGGCTAGAGGTGGTGGTGACCCCAGGGGCCATGGGG
GCT
TATGCTTGCGAGTGTCAGGAGGGTGGAGCCGCCCGTGTGGTGGCTGCTTATAGCTTGGTGTGGGGCA
GC
CAGAGGGGGCCCGCAAACCGGGCCCACACCGTTGTGGGGGCTGGGCTGGTTGGCTTTTTCCTGGGTGT
T
CTAGCAGCATCTCTCACTCTCCTCCTGATTGGTCGCCGTCAGCAGCGGCGGCGACAGAGGGAGCTTCTA
GCT
AGAGACAAGGTGGGCTTAGATCTGGGGGCTCCACCTTCTGGGACCACAAGCTATAGCCAAGACCCTC
CC
TCTCCTTCACCTGAAGATGAACGGCTGCCCCTGGCCCTGGGTAAGCGGGGCAGTGGTTTTGGTGGCTT
C
CCTCCACCCTTCCTGCTGGATTCTTGCCCGAGCCCAGCCCACATCCGGCTCACTGGGGCTCCTCTGGCC
ACG
TGCGATGAGACGTCTATCTAA


Translation (777 aa):
MLARAERPRPGPRPPPVSLFPPPSSLLLLLLAMLSAPVCGRVPRSVPRTSLPISEADSYLTRFAAPHTYN
Y
SALLVDPASHTLYVGARDSIFALTLPFSGEKPRR
IDWMVPETHRQNCRKKGKKEDECHNFIQILAIANA
S
HLLTCGTFAFDPKCGVI
DVSSFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYTATVKNFLGTEPIISR
A
VGRAEDWIRTETLSSWLN
APAFVAAMVLSPAEWGDEDGDDEIFFFFTETSRVLDSYERIKVPRVARVCA
G
DLGGRKTLQQRWTTFLKADLLCPGPEHGRASGVLQDMTELRPQPGAGTPLFYGIFSSQ
WEGAAISAVCA
F
RPQDIRAVLNGPFRELKHDCNRGLPVMDNEVPQPRPGE
CITNNMKFQQFGSSLSLPDRVLTFIRDHPLM
D
RPVFPADGRPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGT
EDGHLHRAVRIGAQLSVLEDLALFPET
Q
PVESMKLYH
DWLLVGSHTEVTQVNTSNCGRLQSCSECILAQDPVCAWSFRLDACVAHAGEHRGMVQDIE
S
ADVSSLCPKEPG
EHPVVFEVPVATVGHVVLPCSPSSAWASCVWHQPSGVTSLTPRRDGLEVVVTPGAMG
A
YACECQEGGAARVVAAYSLVWGSQRGPANRAHTVVGAGLVGFFLGVLAASLTLLLIGRRQQRRRQRELL
A
RDKVGLDLGAPPSGTTSYSQDPPSPSPEDERLPLALGKRGSGFGGFPPPFLLDSCPSPAHIRLTGAPLA
T
CDETSI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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