CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS2020.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
2020.1 |
Public |
Homo sapiens |
2 |
SNRNP200 |
24 |
110 |
108 |
|
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 2020.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENST00000323853.10 |
ENSP00000317123.5 |
MANE Select |
Accepted |
alive |
|
|
|
NCBI |
NM_014014.5 |
NP_054733.2 |
MANE Select |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_054733.2 |
2136 |
O75643-1 |
2136 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 2020.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6411 nt): ATGGCGGATGTAACCGCCCGTAGTCTGCAATACGAGTACAAGGCGAACTCGAATCTTGTGCTCCAAGCTG ACCGTTCTCTCATTGACCGGACCCGCCGGGATGAACCCACAGGAGAGGTGCTGTCCCTTGTTGGGAAGCT GGAGGGCACCCGTATGGGAGACAAGGCTCAACGGACCAAACCGCAGATGCAGGAGGAAAGAAGAGCCAAG CGAAGAAAGCGTGATGAGGACCGGCATGACATCAACAAGATGAAGGGTTATACTCTGCTGTCGGAGGGCA TTGATGAGATGGTGGGCATCATCTACAAGCCCAAAACTAAAGAGACTCGGGAGACCTATGAGGTGCTACT CAGCTTCATCCAGGCTGCTCTTGGGGACCAGCCACGTGATATCCTTTGTGGGGCAGCTGATGAAGTTCTA GCTGTTCTAAAGAATGAAAAGCTGCGGGACAAGGAAAGGCGAAAGGAGATTGACCTGCTGCTGGGTCAAA CAGATGATACCAGATACCATGTGCTAGTGAACCTGGGCAAAAAGATCACAGACTATGGTGGAGATAAGGA AATCCAAAATATGGATGACAACATTGATGAGACATACGGTGTGAATGTGCAGTTTGAGTCTGATGAGGAG GAAGGTGATGAAGACGTATACGGGGAGGTTCGAGAAGAGGCATCTGATGATGACATGGAAGGGGACGAGG CTGTCGTGCGCTGCACCCTCTCGGCTAATCTCGTAGCCTCAGGTGAACTGATGAGTTCCAAGAAGAAGGA TTTGCACCCTCGGGATATTGATGCATTTTGGCTGCAGCGGCAGCTCAGTCGTTTCTATGATGATGCCATC GTGTCGCAGAAGAAGGCAGATGAAGTATTGGAGATTTTGAAGACGGCCAGTGATGATCGGGAATGTGAAA ATCAGCTGGTTCTGCTGCTTGGTTTCAACACCTTTGATTTCATTAAAGTGTTGCGGCAGCACAGGATGAT GATTTTATACTGTACCTTGCTGGCCAGTGCACAAAGTGAAGCTGAAAAGGAAAGGATTATGGGAAAGATG GAAGCTGACCCAGAGCTATCCAAGTTCCTCTACCAGCTTCATGAAACCGAGAAGGAGGATCTGATCCGAG AGGAAAGGTCCCGGAGAGAGCGAGTGCGTCAGTCTCGAATGGACACAGATCTGGAAACCATGGATCTCGA CCAGGGTGGAGAGGCACTGGCTCCACGGCAGGTTCTGGACTTGGAGGACCTGGTTTTTACCCAAGGGAGC CACTTTATGGCCAATAAACGCTGTCAGCTTCCTGATGGATCCTTCCGTCGCCAGCGTAAGGGCTATGAAG AGGTGCATGTGCCTGCTCTGAAGCCCAAGCCCTTTGGCTCAGAAGAACAACTGCTTCCAGTGGAAAAGCT GCCAAAGTATGCCCAGGCTGGGTTTGAGGGCTTCAAAACACTGAATCGGATCCAGAGTAAGCTCTACCGT GCTGCCCTTGAGACGGATGAGAATCTGCTGCTGTGTGCTCCTACTGGTGCTGGGAAGACCAACGTGGCCC TGATGTGCATGCTCCGAGAGATTGGGAAACACATAAACATGGACGGCACCATCAATGTGGATGACTTCAA GATTATCTACATTGCCCCCATGCGCTCCTTGGTGCAGGAGATGGTGGGCAGCTTTGGAAAGCGCCTGGCC ACTTATGGCATCACTGTTGCTGAACTGACTGGGGACCACCAGCTGTGCAAAGAAGAGATCAGTGCCACTC AGATCATCGTCTGCACCCCCGAGAAGTGGGACATCATCACCCGCAAGGGTGGTGAGCGCACCTACACCCA GCTGGTGCGGCTCATCATTCTGGATGAGATTCATCTTCTCCACGATGACAGAGGTCCTGTCTTAGAAGCT TTAGTGGCCAGGGCCATCCGAAACATTGAGATGACCCAAGAGGATGTCCGACTCATTGGTCTCAGTGCCA CCCTACCCAACTATGAAGATGTAGCCACCTTTCTACGTGTTGACCCTGCCAAGGGTCTCTTTTACTTTGA CAACAGCTTCCGTCCAGTGCCTCTGGAACAGACATATGTGGGTATCACAGAGAAAAAAGCTATCAAGCGT TTCCAGATCATGAATGAAATCGTCTATGAAAAAATCATGGAACATGCTGGAAAAAATCAGGTGCTGGTGT TTGTCCACTCCCGGAAGGAGACTGGAAAGACAGCCAGGGCCATCCGGGACATGTGCCTAGAAAAGGACAC TCTGGGTCTGTTTCTGAGGGAGGGCTCAGCCTCCACAGAAGTCCTGCGAACAGAAGCTGAGCAGTGCAAG AACCTAGAGCTGAAGGATCTTCTGCCTTATGGCTTTGCTATTCATCACGCAGGCATGACCAGGGTTGACC GAACACTCGTGGAGGATCTTTTTGCTGATAAACATATTCAGGTTTTAGTTTCCACAGCAACTCTAGCTTG GGGTGTGAATCTCCCTGCACATACAGTCATCATCAAAGGCACCCAGGTGTACAGTCCAGAGAAGGGGCGT TGGACAGAACTGGGAGCACTGGACATTCTGCAGATGCTGGGACGTGCCGGAAGACCCCAGTATGACACCA AGGGTGAAGGCATACTCATCACATCTCATGGGGAGCTACAGTACTACCTGTCCCTCCTCAATCAACAACT TCCTATTGAAAGCCAGATGGTTTCAAAGCTTCCTGACATGCTCAATGCAGAAATCGTGCTAGGAAATGTC CAGAATGCCAAGGATGCGGTGAACTGGCTGGGCTATGCCTACCTCTATATCCGAATGCTGCGATCCCCAA CCCTCTATGGCATCTCTCATGATGACCTCAAGGGAGATCCCCTGCTGGACCAGCGCCGACTAGATCTGGT TCATACAGCTGCCCTGATGCTGGACAAGAACAATCTGGTCAAGTACGACAAGAAGACGGGCAACTTCCAG GTGACAGAACTGGGCCGTATAGCCAGCCACTACTACATCACCAATGATACAGTGCAGACTTACAACCAGC TGCTGAAGCCCACCCTGAGTGAGATTGAGCTTTTCAGGGTCTTCTCATTGTCCTCTGAGTTCAAGAACAT CACAGTGAGAGAGGAGGAGAAGCTGGAGCTGCAGAAGTTGCTGGAGAGGGTGCCTATCCCTGTAAAGGAG AGCATTGAGGAACCCAGTGCTAAGATCAACGTTCTTCTGCAAGCCTTCATCTCACAGCTGAAATTGGAGG GCTTTGCACTGATGGCTGACATGGTGTATGTCACACAGTCGGCTGGCCGGTTGATGCGAGCGATATTTGA AATTGTCCTGAACCGAGGTTGGGCACAGCTTACAGACAAGACCCTGAACCTCTGCAAGATGATCGACAAA CGCATGTGGCAGTCCATGTGTCCTCTGCGCCAGTTCCGGAAACTCCCTGAGGAAGTAGTGAAGAAGATTG AGAAGAAGAATTTCCCCTTTGAGCGTCTGTACGACCTGAATCATAATGAGATTGGGGAGCTTATCCGCAT GCCAAAGATGGGGAAGACCATCCACAAATATGTCCATCTGTTTCCCAAGTTGGAGTTGTCAGTGCACCTG CAGCCTATCACACGCTCCACCCTGAAGGTGGAGCTGACCATCACGCCAGACTTCCAGTGGGATGAAAAGG TGCATGGTTCATCCGAGGCTTTTTGGATTCTGGTGGAGGATGTGGACAGCGAGGTGATTCTGCACCATGA GTATTTTCTCCTCAAGGCCAAGTACGCCCAGGACGAGCACCTCATTACATTCTTCGTGCCTGTCTTTGAA CCGCTGCCCCCTCAGTACTTCATCCGAGTGGTGTCTGACCGCTGGCTCTCTTGTGAGACCCAGCTGCCTG TCTCCTTCCGGCACCTGATCTTGCCGGAGAAGTACCCCCCTCCAACCGAACTTTTGGACCTGCAGCCCTT GCCCGTGTCTGCTCTGAGAAACAGTGCCTTTGAGAGTCTTTACCAAGATAAATTTCCTTTCTTCAATCCC ATCCAGACCCAGGTGTTTAACACTGTATACAACAGTGACGACAACGTGTTTGTGGGGGCCCCCACGGGCA GCGGGAAGACTATTTGTGCAGAGTTTGCCATCCTGCGAATGCTGCTGCAGAGCTCGGAGGGGCGCTGTGT GTACATCACCCCCATGGAGGCCCTGGCAGAGCAGGTATACATGGACTGGTACGAGAAGTTCCAGGACAGG CTCAACAAGAAGGTGGTACTCCTGACAGGCGAGACCAGCACAGACCTGAAGCTGCTGGGCAAAGGGAACA TTATCATCAGCACCCCTGAGAAGTGGGACATACTTTCCCGGCGATGGAAGCAGCGCAAGAACGTGCAGAA CATCAACCTCTTCGTGGTGGATGAGGTCCACCTTATCGGGGGCGAGAATGGGCCTGTCTTAGAAGTGATC TGCTCCCGAATGCGCTACATCTCCTCCCAGATTGAGCGGCCCATTCGCATTGTGGCACTCAGCTCTTCGC TCTCCAATGCCAAGGATGTGGCCCACTGGCTGGGCTGCAGTGCCACCTCCACCTTCAACTTCCATCCCAA TGTGCGTCCCGTCCCCTTGGAGCTGCACATCCAGGGCTTCAACATCAGCCATACACAAACCCGCCTGCTC TCCATGGCCAAGCCTGTGTACCATGCTATCACCAAGCACTCGCCCAAGAAGCCTGTCATTGTCTTTGTGC CGTCTCGCAAGCAGACCCGCCTCACTGCCATTGACATCCTCACCACCTGTGCAGCAGACATCCAACGGCA GAGGTTCTTGCACTGCACCGAGAAGGATCTGATTCCGTACCTGGAGAAGCTAAGTGACAGCACGCTCAAG GAAACGCTGCTAAATGGGGTGGGCTACCTGCATGAGGGGCTCAGCCCCATGGAGCGACGCCTGGTGGAGC AGCTCTTCAGCTCAGGGGCTATCCAGGTGGTGGTGGCTTCTCGGAGTCTCTGCTGGGGCATGAACGTGGC TGCCCACCTGGTAATCATCATGGATACCCAGTACTACAATGGCAAGATCCACGCCTATGTGGATTACCCC ATCTATGACGTGCTTCAGATGGTGGGCCACGCCAACCGCCCTTTGCAGGACGATGAGGGGCGCTGTGTCA TCATGTGTCAGGGCTCCAAGAAGGATTTCTTCAAGAAGTTCTTATATGAGCCATTGCCAGTAGAATCTCA CCTGGACCACTGTATGCATGACCACTTCAATGCTGAGATCGTCACCAAGACCATTGAGAACAAGCAGGAT GCTGTGGACTACCTCACCTGGACCTTTCTGTACCGCCGCATGACACAGAACCCCAATTACTACAACCTGC AGGGCATCTCCCATCGTCACTTGTCGGACCACTTGTCAGAGCTGGTGGAGCAGACCCTGAGTGACCTGGA GCAGTCCAAGTGCATCAGCATCGAGGACGAGATGGACGTGGCGCCTCTGAACCTAGGCATGATCGCCGCC TACTATTACATCAACTACACCACCATTGAGCTCTTCAGCATGTCCCTCAATGCCAAGACCAAGGTGCGAG GGCTTATCGAGATCATCTCCAATGCAGCAGAGTATGAGAACATTCCCATCCGGCACCATGAAGACAATCT CCTGAGGCAGTTGGCTCAGAAGGTCCCCCACAAGCTGAATAACCCTAAGTTCAATGATCCGCACGTCAAG ACCAACCTGCTCCTGCAGGCTCACTTGTCTCGCATGCAGCTGAGTGCTGAGTTGCAGTCAGATACGGAGG AAATCCTTAGTAAGGCAATCCGGCTCATCCAGGCCTGCGTGGATGTCCTTTCCAGCAATGGGTGGCTCAG CCCTGCTCTGGCAGCTATGGAACTGGCCCAGATGGTCACCCAAGCCATGTGGTCCAAGGACTCATACCTG AAGCAGCTGCCACACTTCACCTCTGAGCATATCAAACGTTGCACAGACAAGGGAGTGGAGAGTGTTTTCG ACATCATGGAGATGGAGGATGAAGAACGGAACGCGTTGCTTCAGCTGACTGACAGCCAGATTGCAGATGT GGCTCGCTTTTGTAACCGCTACCCTAATATCGAACTATCTTATGAGGTGGTAGATAAGGACAGCATCCGC AGTGGCGGGCCAGTTGTGGTGCTGGTGCAGCTGGAGCGAGAGGAGGAAGTCACAGGCCCTGTCATTGCGC CTCTCTTCCCGCAGAAACGTGAAGAGGGCTGGTGGGTGGTGATTGGAGATGCCAAGTCCAATAGCCTCAT CTCCATCAAGAGGCTGACCTTGCAGCAGAAGGCCAAGGTGAAGTTGGACTTTGTGGCCCCAGCCACTGGT GCCCACAACTACACTCTGTACTTCATGAGTGACGCTTACATGGGATGTGACCAGGAGTACAAATTCAGCG TGGATGTGAAAGAAGCTGAGACAGACAGTGATTCAGATTGA
Translation (2136 aa): MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQMQEERRAK RRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVL AVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETYGVNVQFESDEE EGDEDVYGEVREEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAI VSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKM EADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEA LVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKR FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCK NLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNV QNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQ VTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKE SIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDK RMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHL QPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNP IQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR LNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVI CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQD AVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAA YYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVK TNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYL KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIR SGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
|