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Report for CCDS20057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20057.1 Public Mus musculus 6 Sval2 23 108 98 CCDS HistoryNCBI Gene:84543Re-query CCDS DB by CCDS ID:20057.1Re-query CCDS DB by GeneID:84543See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014248.10 ENSMUSP00000014248.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014248.10Link to Ensembl Protein Viewer:ENSMUSP00000014248.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000014248Re-query CCDS DB by Protein ID:ENSMUSP00000014248
Original member Current member NCBI NM_032542.2 NP_115931.1 Accepted alive Link to Nucleotide Sequence:NM_032542.2Link to Protein Sequence:NP_115931.1Re-query CCDS DB by Nucleotide ID:NM_032542Re-query CCDS DB by Protein ID:NP_115931Link to BLAST:NP_115931.1

Chromosomal Locations for CCDS 20057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41860339 41860433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41861865 41861967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41863783 41863894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41864198 41864322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCTTCTCTTCAAATGTTCTATCAGCCTGGAGCTCTTATGCATCTCTTGATTCTGTGCTTGTTTTTGG
AGACTCCTTATGGTCAGGAAAATTGGAACAATCCACTTTCACTAGATATGATAGTTTCTCCAATGAAAGG
AAAAAATGAATTTACAGTAACACTCCAGGTTAAAAATAATGTGGGCCAATGTATGGTGGTAAAAGTCAGT
ACTGTGATGAATCCAAGCATCAAGTACCTTTCTGCTCACGCCATTTACACTTCCTGCCTTTGCAGTGCAA
ACAAATACTTCTGGGATATTCAAGTCTCTGACAATACTGCCTTACAAGGGAAGGCAGAAGTTGTTCCAGC
TAAGAGCATATGTCCTGATGATGAAAAGATATTTCCAGTAACTTCCTACGTAGAAACTGCTACACAAAAA
ATCATTGTATCATGA

Translation (144 aa):
MASLQMFYQPGALMHLLILCLFLETPYGQENWNNPLSLDMIVSPMKGKNEFTVTLQVKNNVGQCMVVKVS
TVMNPSIKYLSAHAIYTSCLCSANKYFWDIQVSDNTALQGKAEVVPAKSICPDDEKIFPVTSYVETATQK
IIVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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