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Report for CCDS19997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19997.1 Public Mus musculus 6 Cyren 23 108 98 CCDS HistoryNCBI Gene:78412Re-query CCDS DB by CCDS ID:19997.1Re-query CCDS DB by GeneID:78412See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055097.10 ENSMUSP00000053349.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055097.10Link to Ensembl Protein Viewer:ENSMUSP00000053349.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055097Re-query CCDS DB by Protein ID:ENSMUSP00000053349
Original member Current member EBI ENSMUST00000115007.8 ENSMUSP00000110659.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115007.8Link to Ensembl Protein Viewer:ENSMUSP00000110659.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115007Re-query CCDS DB by Protein ID:ENSMUSP00000110659
Original member Current member NCBI NM_001135611.1 NP_001129083.1 Accepted alive Link to Nucleotide Sequence:NM_001135611.1Link to Protein Sequence:NP_001129083.1Re-query CCDS DB by Nucleotide ID:NM_001135611Re-query CCDS DB by Protein ID:NP_001129083Link to BLAST:NP_001129083.1
Original member Current member NCBI NM_199145.2 NP_954596.1 Accepted alive Link to Nucleotide Sequence:NM_199145.2Link to Protein Sequence:NP_954596.1Re-query CCDS DB by Nucleotide ID:NM_199145Re-query CCDS DB by Protein ID:NP_954596Link to BLAST:NP_954596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129083.1 157 Q8BHZ5-1 157 100% 0 0
NP_954596.1 157 Q8BHZ5-1 157 100% 0 0

Chromosomal Locations for CCDS 19997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34874444 34874695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34875537 34875612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34876539 34876684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGAAACCCTAAAATCCAAGACCAAAACGAGGGTCCTCCCCTCTTGGATGACAGCCCCTGTGGATGAGA
GAAAGGTTGTATCAGTGAAGACAGCCACAAGGAAGCAGACAGCCGCCTGGGCCCAGAGAGTGGGGGCAGC
AACAAGAGCCCCAGCCACGGAGACCGTGTACTGCATGAATGAAGCTGAAATGGTAGACGTGGCACTGGGG
ATCCTGATTGAGGGCCGCAAACAGGAAAAGCCCTGGGAACAGCGGTCTCTGGAGGCCACTGATAAGCTGC
AGCTCTCCCCTCCCTGTTCCTCGTCCCCCGGGAGCAGCAGTGAGGAAGAAGACAGCAGGATCAGCTCTCT
TGCTCCAGGCCTCAGCCCTCCCCGGGGACCAGAAGCTTCGGACTCTCCCTGTAGCAGAAGCCCGGAGGAG
GAGAAGGAGGAGGAAGACGCGTTGAAGTACGTCAGGGAAATATTTTTCAGTTAG

Translation (157 aa):
METLKSKTKTRVLPSWMTAPVDERKVVSVKTATRKQTAAWAQRVGAATRAPATETVYCMNEAEMVDVALG
ILIEGRKQEKPWEQRSLEATDKLQLSPPCSSSPGSSSEEEDSRISSLAPGLSPPRGPEASDSPCSRSPEE
EKEEEDALKYVREIFFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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