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Report for CCDS19962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19962.1 Public Mus musculus 6 Irf5 23 108 98 CCDS HistoryNCBI Gene:27056Re-query CCDS DB by CCDS ID:19962.1Re-query CCDS DB by GeneID:27056See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004392.11 ENSMUSP00000004392.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004392.11Link to Ensembl Protein Viewer:ENSMUSP00000004392.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000004392Re-query CCDS DB by Protein ID:ENSMUSP00000004392
Original member Current member EBI ENSMUST00000163511.6 ENSMUSP00000127021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163511.6Link to Ensembl Protein Viewer:ENSMUSP00000127021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163511Re-query CCDS DB by Protein ID:ENSMUSP00000127021
Original member Current member NCBI NM_012057.4 NP_036187.1 Accepted alive Link to Nucleotide Sequence:NM_012057.4Link to Protein Sequence:NP_036187.1Re-query CCDS DB by Nucleotide ID:NM_012057Re-query CCDS DB by Protein ID:NP_036187Link to BLAST:NP_036187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036187.1 497 P56477 497 100% 0 0

Chromosomal Locations for CCDS 19962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29531137 29531331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29533952 29534141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29534535 29534593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29535041 29535074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29535253 29535510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29535725 29536117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29536204 29536322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29536540 29536785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGAACCACTCAGCCCCAGGGATTCCCCCACCACCCCGCCGTGTGAGGCTGAAGCCCTGGTTGGTGGCCC
AGGTGAACAGCTGCCAGTACCCAGGGCTTCAGTGGGTCAACGGGGAAAAGAAACTCTTCTATATACCCTG
GCGCCATGCCACGAGGCATGGTCCCAGCCAGGATGGGGACAACACCATCTTCAAGGCCTGGGCTAAAGAG
ACAGGGAAGTACACTGAAGGGGTGGATGAGGCTGACCCAGCCAAGTGGAAGGCCAACCTGCGCTGTGCCC
TTAACAAAAGCCGTGACTTCCAGCTGTTCTATGATGGCCCTCGGGACATGCCACCTCAGCCGTACAAGAT
CTACGAGGTCTGCTCCAACGGCCCTGCTCCCACAGAGAGCCAACCCACTGATGATTACGTTCTGGGAGAA
GAGGAGGAGGAGGAAGAGGAAGAGCTCCAGAGAATGCTACCAGGCCTGAGCATCACAGAGCCTGCGCTAC
CTGGGCCTCCCAACGCACCCTATTCCTTACCCAAAGAAGACACCAAGTGGCCACCTGCTCTCCAGCCACC
TGTAGGGCTGGGTCCCCCTGTCCCAGACCCAAATCTCCTGGCCCCTCCCTCTGGAAATCCTGCTGGCTTC
AGGCAGCTTCTCCCTGAGGTCCTGGAGCCTGGACCTCTGGCTTCCAGCCAGCCCCCTACAGAACCACTCT
TGCCTGACCTGCTGATCAGCCCCCACATGTTGCCTTTGACGGACCTAGAGATCAAGTTCCAGTACCGGGG
ACGCGCACCCCGGACCCTCACCATCAGCAACCCACAAGGCTGCAGGCTCTTCTACAGCCAGCTAGAGGCT
ACCCAGGAGCAAGTGGAACTCTTTGGCCCTGTGACCCTGGAGCAAGTGCGCTTCCCTAGCCCAGAGGACA
TCCCCAGTGACAAGCAGCGTTTCTATACGAACCAGCTGCTAGATGTCCTGGACCGTGGGCTCATCCTGCA
GCTGCAGGGCCAGGACCTGTACGCCATCCGTCTGTGCCAGTGTAAGGTGTTCTGGAGTGGGCCCTGCGCC
TTGGCCCATGGCTCCTGCCCCAACCCCATTCAGCGGGAAGTCAAGACGAAGCTCTTTAGCCTAGAGCAGT
TTCTCAATGAGCTCATCCTGTTCCAGAAGGGCCAGACTAATACCCCACCACCTTTTGAGATCTTCTTTTG
CTTTGGAGAAGAATGGCCTGATGTCAAACCCCGAGAGAAGAAGCTCATTACTGTACAGGTGGTACCTGTT
GCAGCCCGGTTGCTGCTGGAGATGTTCTCAGGGGAGCTTTCTTGGTCGGCAGACAGCATCCGACTGCAGA
TCTCAAACCCGGATCTCAAAGACCACATGGTAGAGCAGTTTAAAGAGCTTCATCACCTCTGGCAGTCCCA
GCAGCAATTGCAGCCCATGGTCCAGGCCCCTCCTGTGGCAGGCCTCGATGCAAGCCAGGGGCCCTGGCCC
ATGCACCCAGTTGGCATGCAATAA

Translation (497 aa):
MNHSAPGIPPPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWAKE
TGKYTEGVDEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEVCSNGPAPTESQPTDDYVLGE
EEEEEEEELQRMLPGLSITEPALPGPPNAPYSLPKEDTKWPPALQPPVGLGPPVPDPNLLAPPSGNPAGF
RQLLPEVLEPGPLASSQPPTEPLLPDLLISPHMLPLTDLEIKFQYRGRAPRTLTISNPQGCRLFYSQLEA
TQEQVELFGPVTLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCA
LAHGSCPNPIQREVKTKLFSLEQFLNELILFQKGQTNTPPPFEIFFCFGEEWPDVKPREKKLITVQVVPV
AARLLLEMFSGELSWSADSIRLQISNPDLKDHMVEQFKELHHLWQSQQQLQPMVQAPPVAGLDASQGPWP
MHPVGMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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