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Report for CCDS19911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19911.1 Public Mus musculus 6 Ica1 23 108 98 CCDS HistoryNCBI Gene:15893Re-query CCDS DB by CCDS ID:19911.1Re-query CCDS DB by GeneID:15893See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038403.11 ENSMUSP00000040062.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038403.11Link to Ensembl Protein Viewer:ENSMUSP00000040062.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038403Re-query CCDS DB by Protein ID:ENSMUSP00000040062
Original member Current member EBI ENSMUST00000115520.7 ENSMUSP00000111182.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115520.7Link to Ensembl Protein Viewer:ENSMUSP00000111182.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115520Re-query CCDS DB by Protein ID:ENSMUSP00000111182
Original member NCBI NM_010492.3 NP_034622.3 Updated not alive Link to Nucleotide Sequence:NM_010492.3Link to Protein Sequence:NP_034622.3Re-query CCDS DB by Nucleotide ID:NM_010492Re-query CCDS DB by Protein ID:NP_034622
Current member NCBI NM_010492.4 NP_034622.3 Accepted alive Link to Nucleotide Sequence:NM_010492.4Link to Protein Sequence:NP_034622.3Re-query CCDS DB by Nucleotide ID:NM_010492Re-query CCDS DB by Protein ID:NP_034622Link to BLAST:NP_034622.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034622.3 478 P97411-1 478 100% 0 0

Chromosomal Locations for CCDS 19911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8630676 8630797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8643973 8644242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8653497 8653535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8653630 8653692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8656362 8656408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8658220 8658314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8670694 8670792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8672298 8672423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8737017 8737215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8742255 8742378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8749695 8749767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8754589 8754751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8758366 8758382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGTCAGGACACAAATGTTATTCCTGGGAGTTGCAGGACCGGTTTGCTCAAGATAAGTCAGTTGTCAATA
AGATGCAGCAGAAATATTGGGAGACCAAGCAGGCCTTTATCAAAGCCACGGGGAAGAAGGAAGATGAACA
TGTGGTTGCTTCTGATGCAGACCTGGATGCCAAGCTGGAGCTGTTTCACTCAATCCAGAGAACCTGCCTG
GACTTGTCTAAAGCAATCGTGCTCTATCAAAAGAGAATATGTTTCTTGTCTCAAGAGGAAAATGAACTGG
GAAAGTTTCTTCGATCTCAAGGCTTCCAAGACAAAACCCGAGCAGGAAAAATGATGCAAGCCACGGGCAA
GGCCCTCTGCTTTTCCTCCCAGCAAAGGTTGGCCTTGAGAAACCCTTTGTGTCGATTTCACCAAGAAGTA
GAAACTTTTAGACATCGGGCCATCTCTGATACCTGGCTGACAGTGAACCGCATGGAGCAGTACAGGACAG
AATACAGAGGAGCGTTGTTGTGGATGAAGGATGTGTCTCAGGAACTTGATCCAGACCTCTACAAGCAAAT
GGAGAAGTTCAGGAAGGTGCAGACACAAGTCCGCCTTGCGAAAAAAAACTTTGACAAGTTGAAGATGGAT
GTGTGTCAAAAGGTGGATCTTCTTGGAGCAAGCAGATGTAACCTCTTATCTCACATGCTAGCAACATACC
AGACCACTCTGCTCCACTTTTGGGAGAAAACTTCTCACACCATGGCAGCCATTCATGAGAGCTTCAAAGG
TTATCAACCATATGAATTCACAACGTTAAAGAGCTTACAAGACCCCATGAAGAAGCTAGTTGAGAAAGAA
GGGAAGAAGACCTCCTGGAGGGAAAACCGGGAGGCTGTGGCACCAGAGCCGAGGCAGTTAATTTCTTTGG
AGGATGAGCACAAAGATTCATCTGCTTATAAGACTGAAGAGGGAACAAGCGTTTTGTCTTCCGTAGACAA
AGGTTCTGTACATGACACATGCTCAGGACCCATAGATGAACTATTAGACGGGAAACCCGAGGAAGCGTGC
CTGGGTCCCACGGCAGGGACCCCAGAACCTGAAAGTGGGGACAAGGATGACCTCTTGCTGTTGAATGAGA
TCTTCAGCACTTCCTGCCTGGATGAGGGAGAGTTCAGCAGAGAGTGGGCTGCAGTGTTTGGAGATGACCA
GCTAAAGGAGCCAGCACCCATGGGGGCCCAAGGAGAGCCAGACCCCAAGCCCCAGATAGGCTCCGGATTC
CTTCCGTCACAGCTTTTAGACCAAAATATGAAAGATCTCCAGGCCTCTCTGCAAGAGCCTGCCAAGGCTG
CCTCGGACCTGACTGCCTGGTTCAGCCTCTTTGCTGACCTCGACCCCTTATCAAACCCTGATGCTGTTGG
GAAAACTGATAAAGAACACGAATTGCTCAATGCATGA

Translation (478 aa):
MSGHKCYSWELQDRFAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCL
DLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEV
ETFRHRAISDTWLTVNRMEQYRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMD
VCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKE
GKKTSWRENREAVAPEPRQLISLEDEHKDSSAYKTEEGTSVLSSVDKGSVHDTCSGPIDELLDGKPEEAC
LGPTAGTPEPESGDKDDLLLLNEIFSTSCLDEGEFSREWAAVFGDDQLKEPAPMGAQGEPDPKPQIGSGF
LPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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