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Report for CCDS19856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19856.1 Public Mus musculus 5 Arpc1b 23 108 98 CCDS HistoryNCBI Gene:11867Re-query CCDS DB by CCDS ID:19856.1Re-query CCDS DB by GeneID:11867See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085679.12 ENSMUSP00000082822.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085679.12Link to Ensembl Protein Viewer:ENSMUSP00000082822.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000085679Re-query CCDS DB by Protein ID:ENSMUSP00000082822
Original member Current member NCBI NM_023142.2 NP_075631.2 Accepted alive Link to Nucleotide Sequence:NM_023142.2Link to Protein Sequence:NP_075631.2Re-query CCDS DB by Nucleotide ID:NM_023142Re-query CCDS DB by Protein ID:NP_075631Link to BLAST:NP_075631.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075631.2 372 Q9WV32 372 100% 0 0

Chromosomal Locations for CCDS 19856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145121676 145121739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145122532 145122636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145123569 145123791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145124587 145124694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145125578 145125784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145125891 145125966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145126727 145126932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145127636 145127726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145127821 145127859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCTACCACAGCTTCCTGGTGGAGCCCATCAGCTGCCATGCCTGGAACAAGGACCGTACACAGATCG
CCATCTGCCCCAACAACCATGAGGTGCACATCTATGAGAAGAGCGGTGCCAAGTGGAACAAGGTGCACGA
GCTGAAGGAGCACAACGGGCAGGTGACAGGCATCGACTGGGCCCCTGAGAGTAACCGCATTGTGACCTGC
GGCACGGACCGCAATGCCTATGTGTGGACGCTGAAGGGCCGCACGTGGAAGCCCACACTGGTCATCCTCC
GGATCAATCGAGCTGCCCGCTGTGTGCGCTGGGCCCCCAATGAGAACAAGTTCGCCGTGGGCAGCGGCTC
CCGGGTCATTTCCATCTGTTATTTTGAGCAGGAGAATGACTGGTGGGTGTGCAAACACATAAAAAAGCCC
ATCCGCTCCACAGTGCTCAGCCTGGACTGGCATCCCAACAACGTGCTCCTGGCAGCAGGCTCCTGTGACT
TCAAGTGCAGGATCTTCTCTGCCTATATCAAGGAGGTGGAAGAACGGCCAGCCCCTACACCGTGGGGCTC
CAAGATGCCCTTTGGGGAGCTGATGTTTGAATCGAGCAGCAGCTGTGGCTGGGTGCATGGGGTCTGCTTC
TCGGCCAGTGGGAGCCGAGTTGCTTGGGTCAGCCATGACAGCACTGTATGCCTGGTAGATGCTGACAAGA
AGATGGCCGTGGCAACCCTGGCCTCTGAGACATTACCACTCCTGGCCGTCACCTTCATCACAGAAAATAG
TCTAGTGGCAGCGGGCCACGACTGCTTCCCGGTGCTGTTTACCTATGACAATGCTGCGGTGACATTGAGC
TTCGGTGGCCGGCTGGATGTACCCAAGCAGAGCTCCCAGCGTGGCATGACAGCCCGAGAGCGCTTCCAGA
ACCTGGACAAGAAGGCCAGCTCTGAGGGGGGTGCAGCCACTGGGGCCGGCCTGGATTCACTGCACAAGAA
CAGTGTCAGCCAAATCTCGGTGCTCAGCGGGGGCAAGGCCAAGTGCTCACAGTTCTGCACTACAGGCATG
GATGGCGGCATGAGCATCTGGGACGTGAAGAGCCTGGAGTCAGCCTTGAAGGACCTGAAAATCAAATGA

Translation (372 aa):
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDWAPESNRIVTC
GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKP
IRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF
SASGSRVAWVSHDSTVCLVDADKKMAVATLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLS
FGGRLDVPKQSSQRGMTARERFQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM
DGGMSIWDVKSLESALKDLKIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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