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Report for CCDS19795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19795.1 Public Mus musculus 5 Taf6 23 108 98 CCDS HistoryNCBI Gene:21343Re-query CCDS DB by CCDS ID:19795.1Re-query CCDS DB by GeneID:21343See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048698.13 ENSMUSP00000048016.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048698.13Link to Ensembl Protein Viewer:ENSMUSP00000048016.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048698Re-query CCDS DB by Protein ID:ENSMUSP00000048016
Original member Current member EBI ENSMUST00000110936.7 ENSMUSP00000106561.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110936.7Link to Ensembl Protein Viewer:ENSMUSP00000106561.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110936Re-query CCDS DB by Protein ID:ENSMUSP00000106561
Original member Current member NCBI NM_001356600.1 NP_001343529.1 Accepted alive Link to Nucleotide Sequence:NM_001356600.1Link to Protein Sequence:NP_001343529.1Re-query CCDS DB by Nucleotide ID:NM_001356600Re-query CCDS DB by Protein ID:NP_001343529Link to BLAST:NP_001343529.1
Original member Current member NCBI NM_001356601.1 NP_001343530.1 Accepted alive Link to Nucleotide Sequence:NM_001356601.1Link to Protein Sequence:NP_001343530.1Re-query CCDS DB by Nucleotide ID:NM_001356601Re-query CCDS DB by Protein ID:NP_001343530Link to BLAST:NP_001343530.1
Original member Current member NCBI NM_001356602.1 NP_001343531.1 Accepted alive Link to Nucleotide Sequence:NM_001356602.1Link to Protein Sequence:NP_001343531.1Re-query CCDS DB by Nucleotide ID:NM_001356602Re-query CCDS DB by Protein ID:NP_001343531Link to BLAST:NP_001343531.1
Original member Current member NCBI NM_009315.4 NP_033341.1 Accepted alive Link to Nucleotide Sequence:NM_009315.4Link to Protein Sequence:NP_033341.1Re-query CCDS DB by Nucleotide ID:NM_009315Re-query CCDS DB by Protein ID:NP_033341Link to BLAST:NP_033341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343529.1 678 Q62311 678 100% 0 0
NP_001343530.1 678 Q62311 678 100% 0 0
NP_001343531.1 678 Q62311 678 100% 0 0
NP_033341.1 678 Q62311 678 100% 0 0

Chromosomal Locations for CCDS 19795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138178767 138179147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138179413 138179610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138179780 138179953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138180891 138181016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138181118 138181192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138181908 138182090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138182201 138182302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138182414 138182491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138182598 138182743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138183095 138183214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138183314 138183370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138183568 138183721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138183839 138183925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138184332 138184487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGCCGAGGAGAAGAAACTGAAACTCAGCAATACTGTGTTGCCCTCTGAGTCCATGAAGGTGGTGGCAG
AATCTATGGGCATTGCTCAGATTCAGGAGGAGACTTGCCAGCTACTGACAGATGAGGTCAGCTACCGCAT
CAAGGAGATTGCCCAGGATGCCCTGAAGTTCATGCACATGGGGAAACGACAGAAGCTCACTACCAGTGAC
ATTGACTATGCATTGAAGTTAAAGAATGTGGAGCCACTGTATGGCTTCCATGCTCAGGAGTTCATCCCTT
TCCGGTTTGCCTCTGGCGGGGGCCGGGAGCTGTACTTCTATGAAGAGAAGGAAGTGGACCTGAGTGACAT
CATCAACACCCCTCTGCCTCGGGTGCCTCTGGATGTCTGCCTCAAAGCTCATTGGCTAAGCATCGAAGGC
TGCCAGCCAGCTATACCAGAGAATCCACCCCCAGCTCCCAAAGAGCAGCAGAAGGCTGAGGCCACAGAAC
CCCTGAAATCAGCAAAGCCAGGCCAAGAAGAAGATGGACCCCTGAAAGGCAAAGGTCAAGGGGCAGCTGC
AGCTGATGGCAAAGGAAAAGAGAAGAAGGCACCTCCCTTGCTGGAGGGGGCCCCTTTCCGCCTGAAGCCC
CGCAGCATCCATGAGCTGTCTGTGGAGCAGCAGCTGTATTACAAGGAGATCACGGAAGCCTGTGTGGGAT
CCTGTGAGGCCAAGAGAGCGGAAGCTCTGCAGAGCATTGCCACGGACCCAGGGCTCTATCAGATGCTACC
ACGGTTCAGTACCTTCATCTCAGAGGGGGTCCGTGTGAATGTAGTTCAGAATAACCTGGCCTTGCTTATC
TACCTGATGCGTATGGTGAAGGCCCTGATGGACAACCCCACACTGTATCTAGAGAAATATGTGCATGAGC
TCATTCCAGCAGTAATGACCTGCATTGTGAGTAGACAGCTGTGCTTGCGGCCAGATGTGGACAATCACTG
GGCACTCCGGGATTTTGCTGCCCGTCTAGTGGCCCAAATCTGTAAGCATTTCAGCACAACCACCAACAAC
ATCCAATCCCGAATCACTAAGACCTTTACCAAGAGCTGGGTCGACGAGAAGACTCCATGGACAACTCGAT
ATGGCTCCATTGCAGGCCTAGCAGAGCTGGGACATGATGTGATTAAGACGCTAATTCTGCCAAGGCTGCA
GCAGGAAGGGGAACGGATCCGCAGTGTCTTGGATGGGCCTGTGCTGAGCAACATCGACCGTATTGGAGCA
GACCATGTGCAGAGCCTTCTCCTGAAACACTGTGCCCCAGTACTGGCCAAGCTGCGCCCTCCACCTGACA
ATCAGGATGCCTACCGGGGAGAATTTGGGTCCCTTGGGCCCCTTCTCTGTTCCCATGTGGTGAAGGCCAG
GGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCACACAGCCTCGGCCCACA
CTGACCCTTTCACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTG
CCTTGCCTGTTCAGACACTGGTGTCTGCGAGAGCTGCTGCTCCTCCTCAGCCTTCTCCTCCTCCAACCAA
GTTTATTGTAATGTCCTCATCTTCCAGTGCCTCATCAACCCAGCAGGTTCTGTCCCTCAGCACCTCAGCT
CCTGGCTCAGGCTCTACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGC
TGGTCTCCACTGCTACCACTGCACCCCCAAGCACAGCCCCTGCTGGTTCTGGCAGTGTTCAGAAATACAT
TGTGGTCTCTCTTCCCCCAACAGGGGAAGGCAAAGGAGGCCCTCCTTCTCATCCTTCTCCAGTCCCCCCT
TCATCTTCTTCACCATCCCCACTTGGGGGAAGTACCCTCTGTGGGGGGAAGCAGGAAGCTGGGGACAGCC
CCCCTCCAGCTCCAGGGACTCCAAAGGCTAATGGCTCGCAGCCTACTGGACCTGGCTCTCCCCAGCCTGC
TCTGTGA

Translation (678 aa):
MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSD
IDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEG
CQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKP
RSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLI
YLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNN
IQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGA
DHVQSLLLKHCAPVLAKLRPPPDNQDAYRGEFGSLGPLLCSHVVKARAQAALQAQQVNRTTLTITQPRPT
LTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSASSTQQVLSLSTSA
PGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPAGSGSVQKYIVVSLPPTGEGKGGPPSHPSPVPP
SSSSPSPLGGSTLCGGKQEAGDSPPPAPGTPKANGSQPTGPGSPQPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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