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Report for CCDS197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
197.1 Public Homo sapiens 1 HTR6 24 110 108 CCDS HistoryNCBI Gene:3362Re-query CCDS DB by CCDS ID:197.1Re-query CCDS DB by GeneID:3362See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 197.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289753.2 ENSP00000289753.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289753.2Link to Ensembl Protein Viewer:ENSP00000289753.1Re-query CCDS DB by Nucleotide ID:ENST00000289753Re-query CCDS DB by Protein ID:ENSP00000289753
Original member Current member NCBI NM_000871.3 NP_000862.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000871.3Link to Protein Sequence:NP_000862.1Re-query CCDS DB by Nucleotide ID:NM_000871Re-query CCDS DB by Protein ID:NP_000862Link to BLAST:NP_000862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000862.1 440 P50406 440 100% 0 0

Chromosomal Locations for CCDS 197.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19665754 19666467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19678567 19678725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19678919 19679368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGTCCCAGAGCCGGGCCCAACCGCCAATAGCACCCCGGCCTGGGGGGCAGGGCCGCCGTCGGCCCCGG
GGGGCAGCGGCTGGGTGGCGGCCGCGCTGTGCGTGGTCATCGCGCTGACGGCGGCGGCCAACTCGCTGCT
GATCGCGCTCATCTGCACTCAGCCCGCGCTGCGCAACACGTCCAACTTCTTCCTGGTGTCGCTCTTCACG
TCTGACCTGATGGTGGGGCTGGTGGTGATGCCGCCGGCCATGCTGAACGCGCTGTACGGGCGCTGGGTGC
TGGCGCGCGGCCTCTGCCTGCTCTGGACCGCCTTCGACGTGATGTGCTGCAGCGCCTCCATCCTCAACCT
CTGCCTCATCAGCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCC
CTGCGTGCCCTGGCCCTAGTCCTGGGCGCCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTGCCCCTGCTGC
TGGGCTGGCACGAGCTGGGCCACGCACGGCCACCCGTCCCTGGCCAGTGCCGCCTGCTGGCCAGCCTGCC
TTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCCTCGGGTGCCATATGCTTCACCTACTGCAGG
ATCCTGCTAGCTGCCCGCAAGCAGGCCGTGCAGGTGGCCTCCCTCACCACCGGCATGGCCAGTCAGGCCT
CGGAGACGCTGCAGGTGCCCAGGACCCCACGCCCAGGGGTGGAGTCTGCTGACAGCAGGCGTCTAGCCAC
GAAGCACAGCAGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCTGCTGGGCATGTTCTTTGTGACC
TGGTTGCCCTTCTTTGTGGCCAACATAGTCCAGGCCGTGTGCGACTGCATCTCCCCAGGCCTCTTCGATG
TCCTCACATGGCTGGGTTACTGTAACAGCACCATGAACCCCATCATCTACCCACTCTTCATGCGGGACTT
CAAGCGGGCGCTGGGCAGGTTCCTGCCATGTCCACGCTGTCCCCGGGAGCGCCAGGCCAGCCTGGCCTCG
CCATCACTGCGCACCTCTCACAGCGGCCCCCGGCCCGGCCTTAGCCTACAGCAGGTGCTGCCGCTGCCCC
TGCCGCCGGACTCAGATTCGGACTCAGACGCAGGCTCAGGCGGCTCCTCGGGCCTGCGGCTCACGGCCCA
GCTGCTGCTTCCTGGCGAGGCCACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGCCGTCAATTTC
TTCAACATCGACCCCGCGGAGCCCGAGCTGCGGCCGCATCCACTTGGCATCCCCACGAACTGA

Translation (440 aa):
MVPEPGPTANSTPAWGAGPPSAPGGSGWVAAALCVVIALTAAANSLLIALICTQPALRNTSNFFLVSLFT
SDLMVGLVVMPPAMLNALYGRWVLARGLCLLWTAFDVMCCSASILNLCLISLDRYLLILSPLRYKLRMTP
LRALALVLGAWSLAALASFLPLLLGWHELGHARPPVPGQCRLLASLPFVLVASGLTFFLPSGAICFTYCR
ILLAARKQAVQVASLTTGMASQASETLQVPRTPRPGVESADSRRLATKHSRKALKASLTLGILLGMFFVT
WLPFFVANIVQAVCDCISPGLFDVLTWLGYCNSTMNPIIYPLFMRDFKRALGRFLPCPRCPRERQASLAS
PSLRTSHSGPRPGLSLQQVLPLPLPPDSDSDSDAGSGGSSGLRLTAQLLLPGEATQDPPLPTRAAAAVNF
FNIDPAEPELRPHPLGIPTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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