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Report for CCDS19699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19699.1 Public Mus musculus 5 Psph 23 108 98 CCDS HistoryNCBI Gene:100678Re-query CCDS DB by CCDS ID:19699.1Re-query CCDS DB by GeneID:100678See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031399.12 ENSMUSP00000031399.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031399.12Link to Ensembl Protein Viewer:ENSMUSP00000031399.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031399Re-query CCDS DB by Protein ID:ENSMUSP00000031399
Original member Current member NCBI NM_133900.4 NP_598661.1 Accepted alive Link to Nucleotide Sequence:NM_133900.4Link to Protein Sequence:NP_598661.1Re-query CCDS DB by Nucleotide ID:NM_133900Re-query CCDS DB by Protein ID:NP_598661Link to BLAST:NP_598661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598661.1 225 Q99LS3 225 100% 0 0

Chromosomal Locations for CCDS 19699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129765791 129765898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129766419 129766567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129769239 129769384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129770606 129770740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129771476 129771615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGTCTCCCACTCAGAGCTGAGGAAGCTCTTCTGTTCAGCGGATGCAGTGTGCTTTGATGTTGATAGCA
CCGTCATCAGAGAAGAAGGAATCGATGAGCTGGCCAAATTCTGTGGTGTGGAGGCCGCAGTGTCTGAAAT
GACACGGAGAGCCATGGGAGGAGCATTGCCTTTTAAAGACGCGCTCACTCAGCGCCTGGCACTGATCCAG
CCCTCCAGGGATCAAGTCCAGAGGCTCCTAGCTGAGCACCCGCCACATCTGACTCCTGGCATAAGGGAGC
TGGTAAGCCGCCTCCAGGAGCGTAATGTCCAGGTGTTCCTCATCTCTGGTGGCTTTCGGAGCATTGTGGA
GCACGTTGCTGCAAAGCTCAATATCCCAACAACCAATGTGTTTGCCAATAGGCTGAAGTTCTACTTTAAT
GGTGAGTACGCAGGTTTTGATGAGATGCAGCCGACAGCCGAGTCGGGTGGGAAAGGAAAGGTTATTCGGT
TTTTAAAGGAAAAATTTCACTTTAAGAAAATAATCATGATTGGAGATGGAGCTACGGACATGGAAGCCTG
TCCTCCTGCTGATGCTTTCATTGGCTTTGGAGGCAATGTGATCAGGCAGCAGGTTAAGGACAACGCCAAG
TGGTACATCACTGACTTCGTGGAGCTGCTGGGAGAACTGGAGGAGTGA

Translation (225 aa):
MVSHSELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTQRLALIQ
PSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNIPTTNVFANRLKFYFN
GEYAGFDEMQPTAESGGKGKVIRFLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAK
WYITDFVELLGELEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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