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Report for CCDS19680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19680.1 Public Mus musculus 5 Gtf2h3 23 108 98 CCDS HistoryNCBI Gene:209357Re-query CCDS DB by CCDS ID:19680.1Re-query CCDS DB by GeneID:209357See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031333.3 ENSMUSP00000031333.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031333.3Link to Ensembl Protein Viewer:ENSMUSP00000031333.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031333Re-query CCDS DB by Protein ID:ENSMUSP00000031333
Original member Current member NCBI NM_181410.3 NP_852075.1 Accepted alive Link to Nucleotide Sequence:NM_181410.3Link to Protein Sequence:NP_852075.1Re-query CCDS DB by Nucleotide ID:NM_181410Re-query CCDS DB by Protein ID:NP_852075Link to BLAST:NP_852075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852075.1 309 Q8VD76 309 100% 0 0

Chromosomal Locations for CCDS 19680.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124579189 124579201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124582448 124582527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124583934 124584040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124584136 124584302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124588625 124588687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124589371 124589400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124590350 124590378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124590869 124590943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124592481 124592534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124594763 124594831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124595553 124595688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124595803 124595839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124595918 124595987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCCGCTGACGAAGATGAGTTGAACCTTCTGGTGATCATAGTTGACACCAACCCGATTTGGTGGGGAA
AGCAAGCATTAAAGGAATCTCAGTTTACTTTATCCAAATGCATGGATGCAGTGATGGTGCTGGCGAATTC
TCACCTGTTCATGAACCGCTCCAACCAGCTGGCTGTCATCGCCAGTCACATTCAGGAAAGCCGGCTCTTA
TACCCGGGGAAGAACGGTGGACTTGGAGACTTCTTCGGAGACCCTGGCAATGCGCTCCCCGACTGTAACC
CCTCTGGGAGTAAAGATGGGAAATACGAGCTGTTGACAGTTGCAAACGAGGTGATCGCTGAGGAGATCAA
GGATCTGATGACCAAGAGTGACATCAAGGGCCAGCATACGGAGACACTACTGGCAGGATCCCTGGCCAAA
GCTCTGTGCTACATTCACAGAGTGAACAAGGCAGTTAAAGATAATCAGGAGATGAAATCAAGGATTTTGG
TGATCAAGGCTGCAGAGGACAGCGCACTGCAGTACATGAACTTCATGAACGTCATCTTTGCTGCTCAGAA
GCAGAATATCCTCATCGACGCCTGCGTGCTGGACTCGGATTCAGGGCTCCTCCAGCAGGCTTGTGACATC
ACTGGGGGACTGTACCTGAAGGTGCCTCAGATGCCTTCTCTCCTGCAGTACTTACTGTGGGTTTTTCTTC
CGGACCAAGATCAGCGGTCTCAGCTAATCCTCCCACCCCCGATCCACGTGGACTACAGGGCTGCCTGCTT
CTGTCATCGCAGTCTCATTGAGATTGGCTATGTCTGCTCTGTGTGTCTGTCTATTTTCTGCAATTTCAGC
CCCATCTGCACCACGTGCGAGACAGCTTTTAAGATCTCCCTCCCTCCTGTGCTGAAGGCCAAGAAGAAGA
AACAGAAGGTGTCCCTGTGA

Translation (309 aa):
MAADEDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHIQESRLL
YPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSDIKGQHTETLLAGSLAK
ALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDI
TGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFS
PICTTCETAFKISLPPVLKAKKKKQKVSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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