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Report for CCDS19512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19512.1 Public Mus musculus 5 Pcgf3 23 108 98 CCDS HistoryNCBI Gene:69587Re-query CCDS DB by CCDS ID:19512.1Re-query CCDS DB by GeneID:69587See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046975.11 ENSMUSP00000041790.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046975.11Link to Ensembl Protein Viewer:ENSMUSP00000041790.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046975Re-query CCDS DB by Protein ID:ENSMUSP00000041790
Original member NCBI NM_172716.4 NP_766304.2 Updated not alive Link to Nucleotide Sequence:NM_172716.4Link to Protein Sequence:NP_766304.2Re-query CCDS DB by Nucleotide ID:NM_172716Re-query CCDS DB by Protein ID:NP_766304
Current member NCBI NM_172716.5 NP_766304.2 Accepted alive Link to Nucleotide Sequence:NM_172716.5Link to Protein Sequence:NP_766304.2Re-query CCDS DB by Nucleotide ID:NM_172716Re-query CCDS DB by Protein ID:NP_766304Link to BLAST:NP_766304.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766304.2 241 Q8BTQ0-1 241 100% 0 0

Chromosomal Locations for CCDS 19512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108473798 108473906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108475110 108475206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108478303 108478358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108486140 108486247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108487836 108487924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108495834 108495971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108499627 108499707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108500357 108500404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGTTGACCAGGAAGATTAAACTCTGGGATATAAATGCCCACATCACCTGCCGCCTGTGCAGCGGCTACC
TCATTGACGCAACCACAGTGACTGAGTGTTTGCACACATTCTGCAGGAGCTGCCTGGTGAAGTATCTGGA
GGAGAATAATACCTGCCCCACCTGCAGGATCGTGATCCATCAGAGCCACCCATTACAGTATATCGGTCAT
GACAGAACCATGCAGGACATTGTTTACAAGCTGGTGCCAGGCCTCCAGGAAGCGGAAATGAGGAAACAGA
GGGAATTCTATCACAAACTGGGCATGGAGGTACCAGGTGACATCAAGGGGGAGGCGTGCTCAGCAAAACA
GCACTTAGATCCCCGAAATGGTGAAACCAAAGCAGACGACAATTCAAATAAAGAGACAGCAGAGGAGAAG
CAGGAGGAGGACAATGACTACCACAGGAGTGACGAGCAGGTAAGCATCTGTCTGGAATGCAACAGCAGCA
AACTACGTGGCCTCAAGCGGAAGTGGATCAGATGCTCAGCCCAAGCAACTGTGCTGCACCTGAAAAAATT
TATCGCCAAGAAGCTTAACCTCTCCTCCTTTAATGAGCTGGACATTTTATGCAATGAGGAGATCCTGGGC
AAGGACCACACTCTCAAGTTCGTGGTTGTTACAAGATGGAGATTCAAGAAGGCACCCCTCCTGCTACACT
ACAGACCCAAGATGGACTTGCTGTAA

Translation (241 aa):
MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGH
DRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGEACSAKQHLDPRNGETKADDNSNKETAEEK
QEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILG
KDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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