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Report for CCDS19464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19464.1 Public Mus musculus 5 Plac8 23 108 98 CCDS HistoryNCBI Gene:231507Re-query CCDS DB by CCDS ID:19464.1Re-query CCDS DB by GeneID:231507See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031264.11 ENSMUSP00000031264.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031264.11Link to Ensembl Protein Viewer:ENSMUSP00000031264.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031264Re-query CCDS DB by Protein ID:ENSMUSP00000031264
Original member Current member EBI ENSMUST00000112910.1 ENSMUSP00000108531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112910.1Link to Ensembl Protein Viewer:ENSMUSP00000108531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112910Re-query CCDS DB by Protein ID:ENSMUSP00000108531
Original member Current member EBI ENSMUST00000097437.8 ENSMUSP00000108533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097437.8Link to Ensembl Protein Viewer:ENSMUSP00000108533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097437Re-query CCDS DB by Protein ID:ENSMUSP00000108533
Original member Current member NCBI NM_001370754.1 NP_001357683.1 Accepted alive Link to Nucleotide Sequence:NM_001370754.1Link to Protein Sequence:NP_001357683.1Re-query CCDS DB by Nucleotide ID:NM_001370754Re-query CCDS DB by Protein ID:NP_001357683Link to BLAST:NP_001357683.1
Original member Current member NCBI NM_139198.3 NP_631937.1 Accepted alive Link to Nucleotide Sequence:NM_139198.3Link to Protein Sequence:NP_631937.1Re-query CCDS DB by Nucleotide ID:NM_139198Re-query CCDS DB by Protein ID:NP_631937Link to BLAST:NP_631937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357683.1 112 Q9JI48 112 100% 0 0
NP_631937.1 112 Q9JI48 112 100% 0 0

Chromosomal Locations for CCDS 19464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100556491 100556595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100559752 100559876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100562625 100562733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGGCTCAGGCACCAACAGTTATCGTGACTCAACCTGGATTCGTTCGTGCTCCCCAAAATTCCAACTGGC
AGACCAGCCTGTGTGATTGCTTCAGTGACTGCGGAGTCTGCCTCTGTGGGACCTTTTGTTTCACTTGTCT
TGGATGTCAAGTGGCAGCTGACATGAATGAGTGTTGTCTGTGTGGAACAACGGTGGCCATGAGGACTCTC
TACCGAACCCGATACGGCATTCCTGGATCTATTTGTGATGACTACATGGTCACACTCTTCTGTCCTGTTT
GCTCTGTGTGCCAACTCAAGAGAGACATTAACAGGAGGAGAGCCATGAACGCTTTCTAA

Translation (112 aa):
MAQAPTVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECCLCGTTVAMRTL
YRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINRRRAMNAF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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