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Report for CCDS19175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19175.1 Public Mus musculus 5 Mpv17 23 108 98 CCDS HistoryNCBI Gene:17527Re-query CCDS DB by CCDS ID:19175.1Re-query CCDS DB by GeneID:17527See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154241.7 ENSMUSP00000115292.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154241.7Link to Ensembl Protein Viewer:ENSMUSP00000115292.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154241Re-query CCDS DB by Protein ID:ENSMUSP00000115292
Original member Current member EBI ENSMUST00000201353.3 ENSMUSP00000144198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201353.3Link to Ensembl Protein Viewer:ENSMUSP00000144198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201353Re-query CCDS DB by Protein ID:ENSMUSP00000144198
Original member Current member EBI ENSMUST00000200864.3 ENSMUSP00000144331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200864.3Link to Ensembl Protein Viewer:ENSMUSP00000144331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200864Re-query CCDS DB by Protein ID:ENSMUSP00000144331
Original member Current member NCBI NM_001294324.1 NP_001281253.1 Accepted alive Link to Nucleotide Sequence:NM_001294324.1Link to Protein Sequence:NP_001281253.1Re-query CCDS DB by Nucleotide ID:NM_001294324Re-query CCDS DB by Protein ID:NP_001281253Link to BLAST:NP_001281253.1
Original member Current member NCBI NM_001310527.1 NP_001297456.1 Accepted alive Link to Nucleotide Sequence:NM_001310527.1Link to Protein Sequence:NP_001297456.1Re-query CCDS DB by Nucleotide ID:NM_001310527Re-query CCDS DB by Protein ID:NP_001297456Link to BLAST:NP_001297456.1
Original member Current member NCBI NM_008622.6 NP_032648.1 Accepted alive Link to Nucleotide Sequence:NM_008622.6Link to Protein Sequence:NP_032648.1Re-query CCDS DB by Nucleotide ID:NM_008622Re-query CCDS DB by Protein ID:NP_032648Link to BLAST:NP_032648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281253.1 176 P19258 176 100% 0 0
NP_001297456.1 176 P19258 176 100% 0 0
NP_032648.1 176 P19258 176 100% 0 0

Chromosomal Locations for CCDS 19175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31141781 31141850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31144700 31144752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145246 31145278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145495 31145590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145684 31145776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145973 31146088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31153668 31153737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCACTCTGGCGAGCATACCAGAGAGCCCTGGCAGCACATCCGTGGAAAGTCCAGGTTCTGACAGCTG
GATCACTGATGGGCGTAGGTGACATGATCTCACAGCAGCTGGTGGAGAGGCGGGGTCTCCAGCAACACCA
GGCAGGCCGCACTCTGACCATGGTATCCCTGGGCTGTGGCTTTGTGGGCCCTGTCGTCGGAGGCTGGTAC
AAAGTTTTAGACCACTTAATCCCGGGCACCACGAAGGTGCATGCACTGAAGAAGATGTTGTTAGATCAGG
GGGGCTTTGCCCCATGTTTCCTAGGCTGCTTTCTCCCACTGGTCGGGATACTCAATGGAATGTCAGCCCA
GGACAATTGGGCCAAACTGAAGCGGGACTACCCTGATGCCCTCATCACCAACTACTATCTCTGGCCTGCT
GTGCAGTTAGCCAACTTCTACCTGGTCCCCCTGCATTACAGGTTGGCTGTTGTCCAGTGTGTTGCTATTG
TCTGGAACTCCTACCTATCCTGGAAGGCACATCAGTTCTAA

Translation (176 aa):
MALWRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWY
KVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVGILNGMSAQDNWAKLKRDYPDALITNYYLWPA
VQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKAHQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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