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Report for CCDS18702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18702.1 Public Mus musculus 4 Tmem39b 23 108 98 CCDS HistoryNCBI Gene:230770Re-query CCDS DB by CCDS ID:18702.1Re-query CCDS DB by GeneID:230770See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102588.9 ENSMUSP00000099648.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102588.9Link to Ensembl Protein Viewer:ENSMUSP00000099648.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102588Re-query CCDS DB by Protein ID:ENSMUSP00000099648
Original member Current member NCBI NM_199305.2 NP_955009.1 Accepted alive Link to Nucleotide Sequence:NM_199305.2Link to Protein Sequence:NP_955009.1Re-query CCDS DB by Nucleotide ID:NM_199305Re-query CCDS DB by Protein ID:NP_955009Link to BLAST:NP_955009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955009.1 492 Q810L4 492 100% 0 0

Chromosomal Locations for CCDS 18702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129676566 129676808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129678572 129678692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129684312 129684499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129686771 129687107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129691968 129692122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129692433 129692516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129693066 129693285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129693886 129694012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129696715 129696718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGGAGGACGAAGAGGTCCCAACAGGACATCTTACTATCGAAACCCGCTCTGTGAGCCAGGATCATCAG
GGGCCTCTGGTGGAGGCCACTCTTCTAGTGCATCCGTGAGCAGCGTCCGTTCTCGAAGCAGGACCACTTC
TGGGACGGGCCTCTCCAGCCCTCCGCTGGCCGCGCAGACCGTTGTGCCTCTACAGCACTGCAAGATCCCC
GAGCTGCCCGTCCAGGCCAGCATTCTGTTCGAGCTCCAGCTCTTCTTCTGTCAGCTCATAGCCCTGTTCG
TGCACTACATCAACATCTATAAGACAGTCTGGTGGTATCCACCCTCGCACCCACCCTCCCACACTTCCCT
GAACTTCCACCTGATCGACTTCAACTTGCTGATGGTGACCGCCATTGTTCTGGGCCGCCGATTCATCGGG
TCCATCGTGAAGGAGGCTTCTCAGAGGGGGAAGGTCTCCCTCTTCCGCTCCATCCTGCTGTTCCTCACCC
GCTTCACCGTTCTCACGGCGACAGGCTGGAGTCTGTGCCGGTCCCTCATCCACCTCTTCAGGACCTACTC
CTTCCTGAACCTCCTGTTCCTCTGCTATCCGTTTGGGATGTACATTCCGTTCCTGCAGCTGAACTATGAT
CTTCGCAAGACGAACCTCTTCACCCACATGGCTTCCATGGGACCCCGAGAGGCAGTCAGTGGCCTGGCAA
GGAGTCGGGACTACTTTCTGACACTGCGGGAGACTTGGAAGCAGCATACACGACAGCTATATGGCCCGGA
AGCCATGCCCACCCATGCCTGCTGCTTGTCACCCAGCCTCATTCGCAATGAAGTTGAGTTCCTCAAAATG
GACTTCAATTGGCGAATGAAGGAAGTACTTGTCAGCTCCATGCTGAGTGCCTACTATGTGGCCTTTGTAC
CTGTGTGGTTTGTGAAGAATACACATTACTATGACAAGCGCTGGTCCTGTGAGCTCTTCCTGCTGGTGTC
CATCAGTACCTCCGTGATCCTCATGCAGCACTTGTTGCCTGCCAGCTACTGTGACCTGCTGCACAAGGCC
GCCGCCCACCTGGGCTGCTGGCAGAAGGTGGACCCAGCTCTGTGCTCCAATGTGCTGCAGCACCCGTGGA
CTGAAGAGTGCATGTGGCCACAGGGTGTGCTGGTGAAACACAGCAAGAATGTCTACAAAGCAGTGGGCCA
CTACAACGTGGCCATCCCCTCCGATGTCTCCCACTTCCGCTTCCATTTCTTTTTCAGCAACCCCCTGCGG
ATCCTCAACATCCTTTTGCTGCTGGAGGGTGCCGTCATTGTCTACCAGCTGTACTCCTTAATGTCCTCAG
AGAAGTGGCACCAGACCATCTCCCTGGCCCTCATCCTCTTCAGCAACTACTATGCCTTCTTCAAGCTGCT
CCGGGACCGCCTGGTATTGGGCAAAGCCTACTCCTACTCAGCCAGCCCCCAGAGGGACCTGGACCACCGG
TTCTCCTGA

Translation (492 aa):
MGGRRGPNRTSYYRNPLCEPGSSGASGGGHSSSASVSSVRSRSRTTSGTGLSSPPLAAQTVVPLQHCKIP
ELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNFHLIDFNLLMVTAIVLGRRFIG
SIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYPFGMYIPFLQLNYD
LRKTNLFTHMASMGPREAVSGLARSRDYFLTLRETWKQHTRQLYGPEAMPTHACCLSPSLIRNEVEFLKM
DFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKA
AAHLGCWQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSNPLR
ILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYSYSASPQRDLDHR
FS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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