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Report for CCDS18582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18582.1 Public Mus musculus 4 Zmynd12 23 108 98 CCDS HistoryNCBI Gene:332934Re-query CCDS DB by CCDS ID:18582.1Re-query CCDS DB by GeneID:332934See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094819.4 ENSMUSP00000092414.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094819.4Link to Ensembl Protein Viewer:ENSMUSP00000092414.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094819Re-query CCDS DB by Protein ID:ENSMUSP00000092414
Original member Current member NCBI NM_001014900.2 NP_001014900.2 Accepted alive Link to Nucleotide Sequence:NM_001014900.2Link to Protein Sequence:NP_001014900.2Re-query CCDS DB by Nucleotide ID:NM_001014900Re-query CCDS DB by Protein ID:NP_001014900Link to BLAST:NP_001014900.2

Chromosomal Locations for CCDS 18582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119422886 119422995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119433950 119434091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119437080 119437251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119441749 119441918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119444760 119444882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119448082 119448193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119450255 119450400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119453572 119453688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGAACGTGATCTACCCGCTGGCGGTGCCCAAGGGGCGCCGGCTCTCCTGTGAGGTGTGCGAAGCCCCGG
CCGAGCGGATGTGCACGGCCTGTACAGTCACTTATTACTGTGGTCCTGTGCATCAGAAGGCTGACTGGGA
CAGCATCCATGCGAAGATATGCCAACTGCTCATTCCTCTGCGCACCACCATGCCCTTCTACAACTCAGAG
GAAGAGAGGCAGCATGGTCTGCAGCAGCTGCAGAGGCGACAGAAGCACTTGATTGAATTCTGCTACACTG
TTGCCCAGAAATATCTTTTCGAAGGAAGACACGAAGATGCCGTCCCTGCAGCTTTGCACTCCCTTCGCTT
CCGCATGAACGTGCACGGCCTGAGCTCAGTCGAGCTCGTTCCTGCTTACCTGCTCCTGGCTGAGGCCAGC
CTTGGTCTGGGCCGGATAGTGCAGGCTGAAGAATATCTATCCCAAGCCCAATGGACAGTCCTCAAGTCAA
CTGACTGTAGTAACGCCACCCACTCTTTACTGCATCGGAACCTGGGCCTTCTCTACATAGCCAAGAAAAA
CCTCGATGAAGCCCGGTACCATCTGGCTAATGATATTTATTTTGCCAGTTGTGCATATGGGACAGAAGAC
ATCAGGACCTCAGGAGGCTACTTCCACCTGGCCAATATTTTCTATGGCCTTAAGAAAATGGAGCTGGCTG
ACACACTGTATACAAAGGTCTCGGAGATTTGGTATACATATCTCAACAGTCACTATCAAGCCCTCTTAGA
GGCTCGTTCCCAACAAACAGATTTACTGGGCAAACAGTTTGTGAATGACACCGGCTTGGATGAAGCCCAG
GAAGCAGAAGCCATTCGGATCCTAACTTCAACCCTGATCATTCAAGAATCTACTTCCACCAAAGCTCCCC
AAAAAAGCATCCTTATTCTGAAGACCCTGAGCATACTTTACTATCTGATGTTGGAGTGTTCAAAGGCCAA
GGAATATGCCATGAAAGCCCTCAGCCTAGCTGAGACATACGTCAGTGAGGAGGAACAAAGGTTTATTCAA
GAGTTGCTGAGTGTCATCTCAGCCGAGGAGAAGCAGCCCTAG

Translation (363 aa):
MNVIYPLAVPKGRRLSCEVCEAPAERMCTACTVTYYCGPVHQKADWDSIHAKICQLLIPLRTTMPFYNSE
EERQHGLQQLQRRQKHLIEFCYTVAQKYLFEGRHEDAVPAALHSLRFRMNVHGLSSVELVPAYLLLAEAS
LGLGRIVQAEEYLSQAQWTVLKSTDCSNATHSLLHRNLGLLYIAKKNLDEARYHLANDIYFASCAYGTED
IRTSGGYFHLANIFYGLKKMELADTLYTKVSEIWYTYLNSHYQALLEARSQQTDLLGKQFVNDTGLDEAQ
EAEAIRILTSTLIIQESTSTKAPQKSILILKTLSILYYLMLECSKAKEYAMKALSLAETYVSEEEQRFIQ
ELLSVISAEEKQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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