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Report for CCDS18461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18461.1 Public Mus musculus 4 Calr4 23 108 98 CCDS HistoryNCBI Gene:108802Re-query CCDS DB by CCDS ID:18461.1Re-query CCDS DB by GeneID:108802See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030285.7 ENSMUSP00000030285.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030285.7Link to Ensembl Protein Viewer:ENSMUSP00000030285.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030285Re-query CCDS DB by Protein ID:ENSMUSP00000030285
Original member Current member NCBI NM_001033226.4 NP_001028398.1 Accepted alive Link to Nucleotide Sequence:NM_001033226.4Link to Protein Sequence:NP_001028398.1Re-query CCDS DB by Nucleotide ID:NM_001033226Re-query CCDS DB by Protein ID:NP_001028398Link to BLAST:NP_001028398.1

Chromosomal Locations for CCDS 18461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109235725 109235875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109238778 109238981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109242157 109242251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109244052 109244261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109244689 109244802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109246148 109246291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109251327 109251419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109253750 109254001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGTGTTGGTTTTTTTTTTTTTCTCTCTCTCTCTCTCCTTTCTCCACAGATGGATGGACAAAACGGTGGG
TACAATCTAAACATCAGTCAGATTACGGCCAATTCCAGCTAGCCTCGGGAAAATTTTATCAAGATAAAGA
GAGAGATAAAGGTCTCCAGACCACAGAAGATGCCAAGTTCTACGCCCTTTCCACCAGGTTTAAGCCATTC
AGCAATGAGAATGAGACCTTGGTGGTTCAGTTTTCAGTAAAACACGAGCAAGGCATCGATTGCGGCGGTG
GCTACGTGAAACTCTTTCCTGCCGCACTGAACCAGGAGGACATGCACTCAGAATCCCAGTATTACATCAT
GTTCGGCCCGGACATCTGTGGCTTTGGCAACAACAGACTACAGGTCATCCTTTCTCACAAAGGGAAATAC
CATGAGAACAACAAGACCCTCAAGTGCAGGATTAATAAAGACACTCACCTGTACACTCTGATCCTTCGCC
CTAATGCTACTTATGAGGTTAAAATTGACAACCAGAAGGTGACAAGTGGAGGACTGGAAGATGACTGGGA
CTTCTTGCCTCCCAAGAAAATAAAAGACCCCTACGCCAGGAAACCAAGGAAATGGGATGAACGACAACAG
ATAGAGGATCCTGACGATAAGAAACCTGAGGACTGGGAGGACTCTGAATTCATCCCAGACCCGGATGCCA
AGAAGCCAGATGACTGGAATGAGGCGATGGATGGAGTGTGGGAAGGGCCCTTGATACCAAACGTCAAGTA
CATGGGAGAATGGAAACCTCGGATCATTGACAACCCCAATTACCAGGGCGAGTGGATTCACCCAGAGATA
GACAACCCCAAATACAGGCCTGACCCCACCATTGGTCACTATCACAACATTAGTGTCCTTGGTCTGGATC
TTTGGCAGGTGAAATCAGGCAGCATCTTTGACAATTTCCTTCTAACAAATGATGAAGAGTTTGCTGAAGA
GGTTGGAAATATGACCTGGGGATTAAGAAAGGATGTGGAGCAGCAGTGGAGAGAGCTGTATGAGGAAATG
GAGAAACAGAAGGAGGCGGAGGAGACCAAGAAGAAGAGGGAAAAGGAGAGAGCCAGGCAAGAGGACGTCT
GGGGACTAGATGAGGAGGATGAGGAGGACGCTGAAGAGGACGACGAGGAGGAAGCAGAGGAAAGGCTCAA
GCAGGAAGGCAGTGCAGCGAGGGCGTCTCTGGACCAGAAGGAAGCCCACTTGGATCAGAAGGATGAACTG
TAA

Translation (420 aa):
MCWFFFFSLSLSPFSTDGWTKRWVQSKHQSDYGQFQLASGKFYQDKERDKGLQTTEDAKFYALSTRFKPF
SNENETLVVQFSVKHEQGIDCGGGYVKLFPAALNQEDMHSESQYYIMFGPDICGFGNNRLQVILSHKGKY
HENNKTLKCRINKDTHLYTLILRPNATYEVKIDNQKVTSGGLEDDWDFLPPKKIKDPYARKPRKWDERQQ
IEDPDDKKPEDWEDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYMGEWKPRIIDNPNYQGEWIHPEI
DNPKYRPDPTIGHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEM
EKQKEAEETKKKREKERARQEDVWGLDEEDEEDAEEDDEEEAEERLKQEGSAARASLDQKEAHLDQKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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