NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18042.1 Public Mus musculus 4 Aco1 23 108 98 CCDS HistoryNCBI Gene:11428Re-query CCDS DB by CCDS ID:18042.1Re-query CCDS DB by GeneID:11428See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102973.3 ENSMUSP00000100038.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102973.3Link to Ensembl Protein Viewer:ENSMUSP00000100038.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102973Re-query CCDS DB by Protein ID:ENSMUSP00000100038
Original member NCBI NM_007386.2 NP_031412.2 Updated not alive Link to Nucleotide Sequence:NM_007386.2Link to Protein Sequence:NP_031412.2Re-query CCDS DB by Nucleotide ID:NM_007386Re-query CCDS DB by Protein ID:NP_031412
Current member NCBI NM_007386.3 NP_031412.2 Accepted alive Link to Nucleotide Sequence:NM_007386.3Link to Protein Sequence:NP_031412.2Re-query CCDS DB by Nucleotide ID:NM_007386Re-query CCDS DB by Protein ID:NP_031412Link to BLAST:NP_031412.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031412.2 889 P28271 889 100% 0 0

Chromosomal Locations for CCDS 18042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40163749 40163845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40164609 40164777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40167054 40167191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40175665 40175734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40175842 40176025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40176496 40176635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40177779 40177950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40178973 40179073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40180172 40180288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40181383 40181542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40182804 40182939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40183568 40183652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40184901 40185057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40186316 40186440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40188166 40188270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40189344 40189486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40190737 40190884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40193739 40193861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40196245 40196430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40197554 40197667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2670 nt):
ATGAAGAACCCATTTGCACACCTTGCTGAGCCCTTGGACGCTGCCCAACCAGGAAAGAGGTTCTTCAACT
TGAATAAATTGGAGGACTCAAGATACGGACGCTTACCATTTTCTATCAGAGTTCTCCTGGAGGCAGCCGT
TCGGAACTGTGATGAGTTTCTGGTGAAGAAAAATGACATCGAGAATATCCTGAATTGGAATGTCATGCAA
CATAAGAACATAGAAGTGCCGTTTAAGCCAGCCCGAGTCATACTGCAAGACTTTACGGGTGTGCCTGCTG
TGGTGGATTTTGCAGCAATGCGCGATGCTGTGAAGAAGTTGGGAGGGAATCCGGAGAAAATTAACCCTGT
CTGCCCCGCTGACCTTGTAATTGATCATTCCATCCAGGTTGATTTCAACAGAAGGGCAGACAGTTTACAG
AAGAATCAAGACCTGGAGTTTGAAAGAAATAAAGAACGATTTGAATTTCTAAAGTGGGGTTCCCAGGCCT
TTTGCAACATGCGGATAATCCCTCCTGGCTCGGGAATCATTCACCAAGTGAACCTGGAGTATTTGGCAAG
AGTAGTGTTTGATCAGGATGGATGCTACTACCCAGACAGCCTCGTGGGCACAGATTCACACACGACCATG
ATTGACGGCCTGGGAGTTCTTGGTTGGGGTGTGGGTGGTATTGAAGCAGAAGCTGTCATGCTGGGTCAGC
CCATCAGCATGGTGCTTCCCCAGGTGATTGGCTACAAGCTGATGGGGAAGCCTCACCCTCTGGTGACATC
CACGGACATCGTGCTCACCATTACCAAGCACCTCCGACAAGTGGGAGTTGTGGGCAAATTTGTGGAGTTT
TTCGGGCCAGGAGTGGCTCAGCTGTCCATTGCTGACCGAGCTACGATTGCCAATATGTGCCCAGAGTATG
GTGCGACAGCAGCCTTCTTCCCGGTTGATGAAGTTAGCATCGCGTACCTGCTGCAGACAGGCCGCGAGGA
AGACAAAGTCAAGCACATTCAGAAGTATCTTCAGGCTGTAGGCATGTTTCGAGATTTCAACGACACCTCT
CAAGACCCAGACTTCACTCAGGTTGTGGAGTTAGATCTGAAAACAGTTGTGCCTTGCTGCAGTGGACCCA
AAAGACCTCAGGACAAAGTCGCGGTGTCTGAGATGAAAAAGGACTTTGAAAGCTGCCTTGGAGCCAAGCA
AGGATTTAAAGGTTTCCAAGTTGCTCCAGACCGTCACAATGACCGCAAGACGTTCCTCTATAGTAACAGT
GAATTCACTCTCGCTCATGGCTCTGTGGTAATCGCTGCCATCACTAGCTGCACAAACACCAGCAATCCAT
CCGTGATGTTAGGAGCAGGATTGTTAGCAAAGAAAGCTGTGGAGGCGGGGCTGAGTGTGAAGCCTTACAT
CAAAACCAGCCTGTCTCCTGGAAGTGGAGTGGTCACCTACTACCTTCGAGAGAGTGGAGTCATGCCTTAC
CTGTCCCAGTTAGGGTTTGATGTGGTGGGCTACGGCTGCATGACCTGCATCGGCAACAGTGGACCCCTTC
CTGAACCTGTGGTCGAGGCAATCACCCAGGGAGACCTCGTAGCTGTTGGCGTTCTGTCTGGGAATAGGAA
TTTTGAAGGCCGAGTCCATCCTAACACACGAGCCAACTACTTAGCATCCCCCCCTCTGGTAATAGCATAT
GCGATTGCAGGCACCGTCAGGATTGACTTCGAGAAAGAGCCTTTGGGAGTGAACGCACAGGGCCGGCAAG
TGTTTCTGAAGGACATCTGGCCCACGCGAGATGAGATCCAGGCGGTGGAAAGGCAGCATGTCATCCCCGG
GATGTTTAAGGAGGTCTATCAGAAAATAGAGACTGTAAACAAAAGCTGGAATGCCTTAGCAGCCCCGTCA
GAGAAGCTGTATGCGTGGAATCCCAAATCTACTTACATTAAGTCGCCACCATTCTTTGAAAGCTTGACTT
TAGATCTCCAGCCACCCAAGTCCATAGTGGATGCCTATGTGCTACTGAATTTAGGAGATTCAGTAACAAC
GGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTGCGGCTCGCTACTTGACGAACAGAGGC
CTAACACCACGAGAGTTCAACTCCTATGGCTCCCGCCGGGGTAACGACGCCATCATGGCCCGGGGGACAT
TTGCCAACATTCGCTTGCTGAACAAGTTTCTGAACAAGCAGGCACCTCAGACTGTCCATCTCCCCTCAGG
AGAAACCCTTGATGTATTCGACGCTGCTGAGCGGTACCAGCAGGCTGGACTTCCCCTGATTGTTCTGGCT
GGGAAAGAATACGGTTCAGGCAGCTCCCGAGACTGGGCAGCCAAAGGCCCTTTCCTGCTGGGAATCAAAG
CTGTCCTGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGGGGGTGATCCCCCTTGA
GTATCTCCCTGGTGAAACTGCAGACTCTCTGGGACTCACAGGTCGGGAAAGATACACTATCAACATCCCT
GAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGTGATGA
GGTTCGACACTGATGTGGAGCTCACGTACTTCCACAATGGAGGCATCCTGAACTACATGATCCGAAAGAT
GGCCCAGTAG

Translation (889 aa):
MKNPFAHLAEPLDAAQPGKRFFNLNKLEDSRYGRLPFSIRVLLEAAVRNCDEFLVKKNDIENILNWNVMQ
HKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGNPEKINPVCPADLVIDHSIQVDFNRRADSLQ
KNQDLEFERNKERFEFLKWGSQAFCNMRIIPPGSGIIHQVNLEYLARVVFDQDGCYYPDSLVGTDSHTTM
IDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYKLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEF
FGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSIAYLLQTGREEDKVKHIQKYLQAVGMFRDFNDTS
QDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSEMKKDFESCLGAKQGFKGFQVAPDRHNDRKTFLYSNS
EFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVKPYIKTSLSPGSGVVTYYLRESGVMPY
LSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAY
AIAGTVRIDFEKEPLGVNAQGRQVFLKDIWPTRDEIQAVERQHVIPGMFKEVYQKIETVNKSWNALAAPS
EKLYAWNPKSTYIKSPPFFESLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRG
LTPREFNSYGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTVHLPSGETLDVFDAAERYQQAGLPLIVLA
GKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADSLGLTGRERYTINIP
EDLKPRMTVQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKMAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH