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Report for CCDS17959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17959.1 Public Mus musculus 4 Asph 23 108 98 CCDS HistoryNCBI Gene:65973Re-query CCDS DB by CCDS ID:17959.1Re-query CCDS DB by GeneID:65973See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103004.9 ENSMUSP00000100069.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103004.9Link to Ensembl Protein Viewer:ENSMUSP00000100069.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103004Re-query CCDS DB by Protein ID:ENSMUSP00000100069
Original member Current member NCBI NM_133723.2 NP_598484.2 Accepted alive Link to Nucleotide Sequence:NM_133723.2Link to Protein Sequence:NP_598484.2Re-query CCDS DB by Nucleotide ID:NM_133723Re-query CCDS DB by Protein ID:NP_598484Link to BLAST:NP_598484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598484.2 207 Q8BSY0-2 207 99.5169% 0 1

Chromosomal Locations for CCDS 17959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9621880 9622226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9624360 9624401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9635901 9635969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9639198 9639347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9643535 9643550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCTGAAGATAAAGAGGCAAAGCACGGAGGACACAAGAATGGGAGAAGAGGAGGGATTTCAGGAGGGT
CCTTTTTCACATGGTTCATGGTCATTGCATTGCTCGGCGTCTGGACATCTGTGGCTGTCGTGTGGTTTGA
CTTGGTCGATTATGAAGAAGTTCTAGGAAAACTAGGAGTCTATGATGCGGATGGCGATGGAGACTTTGAT
GTGGATGATGCCAAAGTTTTATTAGAAGGACCTGGTGGGTTAGCCAAGAGGAAAACTAAGGCTAAAGCTA
AAGAACCCATCAAAGAAGAGCTGAAGAAGGAGAGAGGGAAAGCTGTGCCTAGCAAGAATGAAGAGCGAAG
GCAGGGGAAGAAGGAGCAGGAGGATAGAGGGAAGGGGAGGAAGAAGCCTGACTCAGACACATCCCAGAAA
GCATCCGCTGCAGGGAAGAGAGACAGAGACAAGGAGAAAGCCAGCTCTGACAAGAGTTCCAAGTCTAAGG
AAAGCTGGAAGAAGGCCGTAGAGACAAAGGCTGTTTCTAGTAAAGTGGCTGCCAGAGACAAAGACAGGCG
AGGAAGAAGCTCCTCTGGGCATGCTCACGTCGCCAAGGAAAATGGCCAGAAGAGAAAGAACTGA

Translation (207 aa):
MAEDKEAKHGGHKNGRRGGISGGSFFTWFMVIALLGVWTSVAVVWFDLVDYEEVLGKLGVYDADGDGDFD
VDDAKVLLEGPGGLAKRKTKAKAKEPIKEELKKERGKAVPSKNEERRQGKKEQEDRGKGRKKPDSDTSQK
ASAAGKRDRDKEKASSDKSSKSKESWKKAVETKAVSSKVAARDKDRRGRSSSGHAHVAKENGQKRKN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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