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Report for CCDS17914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17914.1 Public Mus musculus 3 Gipc2 23 108 98 CCDS HistoryNCBI Gene:54120Re-query CCDS DB by CCDS ID:17914.1Re-query CCDS DB by GeneID:54120See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046614.9 ENSMUSP00000037328.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046614.9Link to Ensembl Protein Viewer:ENSMUSP00000037328.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046614Re-query CCDS DB by Protein ID:ENSMUSP00000037328
Original member Current member NCBI NM_016867.1 NP_058563.1 Accepted alive Link to Nucleotide Sequence:NM_016867.1Link to Protein Sequence:NP_058563.1Re-query CCDS DB by Nucleotide ID:NM_016867Re-query CCDS DB by Protein ID:NP_058563Link to BLAST:NP_058563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058563.1 314 Q9Z2H7 314 100% 0 0

Chromosomal Locations for CCDS 17914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152094147 152094295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152102619 152102700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152107941 152108047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152128036 152128216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152137573 152137758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152165648 152165887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGCCGCTTGGACTGCGCGGGAAGAAGAAGGCGGCCAAGTCCAAGGAGGCCGCGAGGCTGGTGGAGGGCG
AGAGATCCAGTGGCAGCCAGGGTGTCCCCGGACCCCCAGCTCCGGCACGCAAGCTGGTGTTCCACGCACA
GCTGGCGCACGGCAGCGCCACGGGCCGAGTGGAGGACTTCTCCAGCATCAGCGAGCTCTACGCCAAGATT
GCCGGCGTGTTCGAGATCGCGCCATCCGAGATCTTATTTTGTACCTTAAATACGCCTAAAATTGACATGG
GAAAGCTCCTGGGTGGGCAGCTGGGCCTTGAGGATTTCATATTTGCCCACGTGAAAGGCACAAAAAAGGA
AGTGAATGTTTATAAATCAGAGGATTCGCTTGGACTCACCATCACGGATAACGGCGTGGGCTATGCTTTT
ATCAAGAGAATTAAAGATGGCAGCACCATTGACTCAGTTAAAACGATCTGTGTGGGGGATCATATCGAAT
GTATAAACGGAGAAAATATTGTTGGGTGGCGTCACTTTGAAGTCGCTAAGAAGTTAAAGGAATTGAAAAA
GGAGGAGCTCTTTACTTTGCAGTTAATAGAACCCAAGAAGGCTTTTGAAATAGGACCAAGGTCGAAAGCC
GGAAAGACATCAACAGAAAAAATTGGTACTTCAAGAGGGACCCTCCGTCTGAGATCGAAAGGCCCCGCTA
CAGTAGAAGAGCTGCCCTCTGAAGCCAAGGCAAAGGCAATCGGAAAGGTTGATGATCTCCTTGAGCTGTA
CATGGGGATTCGAGATATTGACTTAGCTACAACCATGTTTGAAGCTGGGAAAGACAAGAGCAACCCAGAT
GAGTTTGCTGTCGCTCTTGACGAGACTCTGGGAGACTTTGCCTTTCCTGATGAGTTCCTGTTCGACGTGT
GGGGAGCCATCAGTGACATGAAACAAGGAAGATGA

Translation (314 aa):
MPLGLRGKKKAAKSKEAARLVEGERSSGSQGVPGPPAPARKLVFHAQLAHGSATGRVEDFSSISELYAKI
AGVFEIAPSEILFCTLNTPKIDMGKLLGGQLGLEDFIFAHVKGTKKEVNVYKSEDSLGLTITDNGVGYAF
IKRIKDGSTIDSVKTICVGDHIECINGENIVGWRHFEVAKKLKELKKEELFTLQLIEPKKAFEIGPRSKA
GKTSTEKIGTSRGTLRLRSKGPATVEELPSEAKAKAIGKVDDLLELYMGIRDIDLATTMFEAGKDKSNPD
EFAVALDETLGDFAFPDEFLFDVWGAISDMKQGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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