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Report for CCDS17851.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17851.2 |
Public |
Mus musculus |
3 |
Cxxc4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:319478](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17851.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:319478](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 17851.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 17851.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000181904.2 |
ENSMUSP00000138000.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000181904.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000138000.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000181904](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000138000](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001004367.4 |
NP_001004367.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001004367.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001004367.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001004367](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001004367](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001004367.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 17851.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1101 nt): ATGAACACCAATGTCTGCGTGGAGCCCGGGCCGAGCCCGGAGGCCCCGGGCTTGCCCAAGGAAAGCCACC TGCCCGAGGGGGCCCTGAACAGCCTTGTGGATTACAACTCGGAGATGGAGCGTTACCGCTCCTTTGCCAC CTCCTTCTACAAGACCAACGGGGGCGCCTTCCCGCAGGCAGCCAAGATCGCGCGCATCACCACCCCCATC TTCCCCAGCAGCGCCGCCGCCGCCGCGGCCGCCGCGCGCATCGGCATGTCCCCGTGGAACTGCGACAACG CGGCCACCGCCGCCGCCACCGCGATGCTCTGGGGCAGCGGGGGCGGCGGCGGAGGCGGTGGGGGCGGGGG TGGGGGCGGCGGGGCCGGCAGGAAATCCTCCTCGGCCGCCGCCTCCTCCTCCGCCTCCTCCTCGGCGATC CTCCCCGCCGCCGGCGGTGGCGGTGGCGGCGGCGGCGGTGGCAGCGGCGGAGGCGGCGGCGGCGGCGGCG GCGGCAGGACCAGCATGCACCACCGGAACGACTCCCAGCGGCTGGGGAAGGCTGGCTGTCCGCCAGAGCC GTCGTTGCAAATGGCAAATACTAATTTCCTCTCCACCTTATCCCCCGAACACTGCAGACCTTTGGCGGGG GAATGCATGAACAAGCTCAAATGCGGCGCTGCTGAAGCAGAGATAATGAATCTCCCCGAGCGGGTGGGGA CTTTTTCCGCTATCCCGGCTTTAGGGGGCATCTCATTACCTCCAGGGGTCATCGTCATGACAGCCCTTCA CTCCCCCGCAGCAGCCTCAGCAGCCGTCACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCG CAGAATCATTCCTCCTCCTCCTCGTCCTCCTCGGGGGGAGCTGGCGGAGCCAACCCGGCCAAGAAGAAGA GGAAAAGGTGTGGGGTCTGCGTGCCCTGCAAGAGGCTCATCAACTGTGGCGTCTGCAGCAGTTGCAGGAA CCGCAAAACGGGACACCAGATCTGCAAATTTAGAAAATGTGAAGAGCTAAAGAAAAAACCTGGCACTTCG CTAGAGAGAACACCTGTTCCCAGCGCTGAAGCGTTCCGATGGTTCTTTTAA
Translation (366 aa): MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQAAKIARITTPI FPSSAAAAAAAARIGMSPWNCDNAATAAATAMLWGSGGGGGGGGGGGGGGGAGRKSSSAAASSSASSSAI LPAAGGGGGGGGGGSGGGGGGGGGGRTSMHHRNDSQRLGKAGCPPEPSLQMANTNFLSTLSPEHCRPLAG ECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCP QNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTS LERTPVPSAEAFRWFF
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