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Report for CCDS17839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17839.1 Reviewed, update pending Mus musculus 3 Mcub 23 108 98 CCDS HistoryNCBI Gene:66815Re-query CCDS DB by CCDS ID:17839.1Re-query CCDS DB by GeneID:66815See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 17839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029624.14 ENSMUSP00000029624.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029624.14Link to Ensembl Protein Viewer:ENSMUSP00000029624.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029624Re-query CCDS DB by Protein ID:ENSMUSP00000029624
Original member NCBI NM_025779.3 NP_080055.2 Updated not alive Link to Nucleotide Sequence:NM_025779.3Link to Protein Sequence:NP_080055.2Re-query CCDS DB by Nucleotide ID:NM_025779Re-query CCDS DB by Protein ID:NP_080055
Current member NCBI NM_025779.4 NP_080055.3 Pending alive Link to Nucleotide Sequence:NM_025779.4Link to Protein Sequence:NP_080055.3Re-query CCDS DB by Nucleotide ID:NM_025779Re-query CCDS DB by Protein ID:NP_080055Link to BLAST:NP_080055.3

Chromosomal Locations for CCDS 17839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129915109 129915186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129915703 129915819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129916939 129917142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129918586 129918746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129926365 129926469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129933583 129933753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129934625 129934700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129969950 129970075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCCAGGAGCTCTGTCCGGCAGGAGGATGCTCCCGAGCGGGCTATGTCTGGGTCGGTGGCAGCTGCTGC
GGACGATCCGAGCCCGCGGCCGCGGGGATCCCAGGGAGCTGCCATCCACACCCCAGGTTTTATGTATGAA
ACTCTATGGAAATCCAAAATACCACCAAGCACTCCATTATGGGACAGTGGAGCCACAGGATGAAATAACA
GTTACTTATAAACACGGCCTTCCCTTGGTAACCCTCACTCTGCCATCCAGAAAAGAGCGCTGCCAGTTTG
TAGTCAAGCCGATGTTGTCGACAGTAGGCTCATTCCTGCAGGACTTACAGAATGAGGATAAAGGCATCAA
AACTGCAGCCATCATCACGGCAGATGGCAGTGAAATTCCAGCTTCAACATTGATGGACACTTTGCTAATG
ACAGATTTTAAGCTCATCATTAACAAACTACGGTATGATATACGGTGTCACAAGAAAGAAGAGCCAAGTG
GAGAGCATATGACTGAGTTGGAAAACACCAAGTCCTTGGTTCACAGACTATTCACTATCCTGCATTTAGA
GGAGATCCAGAAGAGACGAGAGCGCCATCTGATGGCGAAGATCGACCACCTGCAGGAACAGCTGCGGCCC
TTGGAGCAGGTCAAAGCTGCAATAGAAGCCCGGTCGGAAGCCAACACCAGTGGTCTCCTGTGGGCCGGCT
TAGCTCTGCTCTCCGTGCAGGGCGGGGCGCTGGCCTGGCTTACTTGGTGGGTGTACTCCTGGGATATCAT
GGAGCCAGTTACCTTCTTCCTGTCGTTTGCGAATTCCATCGTCTTTTTTGCATACTTCATCATAACCCGG
CAGAACTACACATACTCATCCCTCCGGAGCAGGCAGTTTCTTCAGTTCTTCCACAAGAAATCGCAGCGGC
GGTGTTTTGATGTGGAACAATACAACAAGCTAAAGGAAGACCTTGCTGAGGCTACAGAATCCCTGGAAAG
CGTGCGCCGCTCCCTCCGCTTGCGAATCCAAGGAGAGGAAGCCAGCGAGAAGAACTAG

Translation (345 aa):
MPGALSGRRMLPSGLCLGRWQLLRTIRARGRGDPRELPSTPQVLCMKLYGNPKYHQALHYGTVEPQDEIT
VTYKHGLPLVTLTLPSRKERCQFVVKPMLSTVGSFLQDLQNEDKGIKTAAIITADGSEIPASTLMDTLLM
TDFKLIINKLRYDIRCHKKEEPSGEHMTELENTKSLVHRLFTILHLEEIQKRRERHLMAKIDHLQEQLRP
LEQVKAAIEARSEANTSGLLWAGLALLSVQGGALAWLTWWVYSWDIMEPVTFFLSFANSIVFFAYFIITR
QNYTYSSLRSRQFLQFFHKKSQRRCFDVEQYNKLKEDLAEATESLESVRRSLRLRIQGEEASEKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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