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Report for CCDS17701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17701.1 Public Mus musculus 3 Lrig2 23 108 98 CCDS HistoryNCBI Gene:269473Re-query CCDS DB by CCDS ID:17701.1Re-query CCDS DB by GeneID:269473See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046316.10 ENSMUSP00000035999.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046316.10Link to Ensembl Protein Viewer:ENSMUSP00000035999.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046316Re-query CCDS DB by Protein ID:ENSMUSP00000035999
Original member Current member NCBI NM_001025067.2 NP_001020238.1 Accepted alive Link to Nucleotide Sequence:NM_001025067.2Link to Protein Sequence:NP_001020238.1Re-query CCDS DB by Nucleotide ID:NM_001025067Re-query CCDS DB by Protein ID:NP_001020238Link to BLAST:NP_001020238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020238.1 1054 Q52KR2-1 1054 100% 0 0

Chromosomal Locations for CCDS 17701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104457765 104457964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104461401 104461688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104462659 104462808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104463859 104464308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104465487 104465768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104467043 104467363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104468485 104468648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104479782 104479850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104480109 104480180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104481855 104481935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104490530 104490673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104490868 104491011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104491411 104491554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104491689 104491832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104494058 104494192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104494631 104494705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104497489 104497554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104511456 104511691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3165 nt):
ATGGCGGCCGCGCCCCGCGGCATCTGGGAGCAGCGGCGCCTGGGCTGTGGGTTGGGACCCCTCGCACGGT
TGCTCATCCTTGCGCAGGCGCTGCGGCTGCTGCCCGCTGCCCGAGCCGGCCTGTGCCCGGCGCCCTGCGC
CTGCCGTCTTCCTCTGCTGGACTGCAGTCGCAGGAAGCTGCCCGCGCCCAGCTGGAGGGCACTGTCGGGC
CCGCTGCCCTCCGACATCTCCAGCCTGGATTTGAGTCATAACCGGTTGTCTAACTGGAACAACACCTTGG
AATCACAAACATTACAAGAAGTGAAAATGAATTACAATGAGCTAACAGAGATACCATATTTTGGAGAACC
AACACCTAATATTACTCTACTTTCATTGGTGCATAATTTAATCCCAGAAATAAATGCAGAAGCATTCGAG
CTTTATTCTGCTCTTGAGAGTTTAGACCTCAGTTCCAATATAATATCAGAAATCAAGACATCTTCATTTC
CTCGAATGTCACTGAAATACCTGAATTTGAGCAATAATAGGATAAGCACCTTGGAGGCTGGCTGCTTTGA
CAACTTATCAGATTCTTTATTAGTGGTAAAACTGAACCGGAACCGAATTAGCATGATTCCACCCAAGGTC
TTCAAGCTGCCTCATCTCCAGTTCTTGGAACTGAAAAGAAACAGGATTAAAATTGTAGAAGGCCTTACCT
TCCAAGGGCTTGATTCTTTACGCTCATTGAAAATGCAGCGGAATGGAATTAGCAAACTCAAAGATGGAGC
ATTTTTTGGCTTGAATAATATGGAAGAATTAGAACTGGAACATAATAACCTTACAGGAGTGAACAAGGGG
TGGCTATATGGCTTGCGAATGTTACAGCAACTGTATATGAGCCAGAATGCTATTGAAAAAATCAGCCCCG
ATGCATGGGAGTTCTGCCAGAGACTGTCTGAACTGGATTTGTCCTATAACCAGCTGACCCGCCTTGATGA
ATCTGCCTTTGTGGGTCTGAGCTTACTGGAGAGATTGAATTTAGGGGACAATAGAGTCACTCACATTGCT
GATGGTGTATTTAGGTTTCTTTCCAATCTTCAGACATTAGATTTGAGAAACAATGACATTTCATGGGCCA
TAGAAGATGCTAGCGAAGCCTTTTCTGGACTCAAAAGTCTCACTAAGTTAATCTTGCAAGGAAACCGGAT
TAAGTCAGTTACACAGAAAGCATTCATTGGCCTTGAGTCCCTTGAGTATCTAGATTTGAACAACAATGCT
ATAATGTCTATCCAAGAAAATGCTTTTTCTCAGACTCACTTAAAGGGACTTGTTCTGAACACAAGCAGTT
TGCTCTGCGATTGTCATTTGAAGTGGTTACTTCAGTGGCTGGTGGATAACAATTTCCATCATTCTGTGAA
TGTAAGCTGTGCACATCCTGAATGGTTAGCGGGGCAAAGCATCTTGAATGTGGACCTGAAAGATTTTGTC
TGTGATGATTTTCTGAAGCCTCAGATAAGGACACACCCTGAAAGCACAATTGCATTAAGAGGTGTTAATG
TGACACTGACGTGCACTGCAGTGAGCAGCAGCGATTCACCCATGTCCACCATATGGCGCAAGGACAGTGA
GATCCTGTATGATGTGGATATTGAGAATTTTGTTCGTTATCGGCAGCAGGATGGAGAAGCTCTAGAATAT
ACTAGTGTCTTGCGCCTCTTCAGTGTGAACTTCACAGATGAAGGGAAATACCAGTGCATTGTTACTAATC
ACTTTGGTTCTAATTATTCTCAGAAAGCCAAATTGACTGTAAATGAGATGCCGTCTTTTTTGAAAACTCC
AATGGATCTAACTATTCGCACTGGTGCCATGGCAAGATTAGAATGTGCTGCAGAGGGGCACCCTACACCT
CAGATTTCCTGGCAGAAGGATGGTGGCACTGATTTTCCTGCAGCCCGAGAAAGACGCATGCATGTCATGC
CTGAGGATGATGTCTTCTTCATTGCCAATGTGAAGATAGAAGATATGGGAATCTATAGCTGCATGGCACA
GAATATAGCAGGAGGCCTCTCAGCAAACGCCTCACTCACAGTGTTAGAGACACCCTCGTTTATTAGGCCT
CTGGAGGACAAGACCGTCACCCGAGGTGAGACAGCGGTATTGCAGTGCATCGCTGGAGGAAGTCCTGCTC
CTCGCCTCAATTGGACCAAGGATGATGGGCCACTCCTAGTAACAGAACGACACTTCTTTGCTGCAGCCAA
TCAGCTTCTCATCATTGTAGATGCTGGGCTAGAAGATGCTGGAAAATATACCTGCCTTATGTCTAACACT
CTTGGGACAGAACGGGGACATATTTACTTAAATGTCATTTCATCCCCCAATTGTGACTCTTCTCAGAGTA
GCATTGGGCATGAGGATGATGGTTGGACCACAGTTGGCATTGTCATCATTGTTGTGGTCTGCTGTGTCGT
GGGCACATCTTTGATCTGGGTCATTGTCATTTACCACATGAGAAGGAAAAATGAAGACTACAGCATCACA
AACACAGAGGAGCTTAATTTGCCTGCAGACATTCCCAGCTATTTGTCTTCACAAGGAACATTGTCTGAAC
CACAGGAAGGCTACAGCAACTCTGAGGCAGGCAGCCATCAGCAACTTATGCCTCCTGCCAACGGGTACAC
ACACAGAGGCACTGACGGTGGCGCTGGTACCCGGGTGATCTGTTCAGATTGTTACGACAATGCCAACATC
TACTCGAGGACCAGAGAGTACTGTCCATATACCTATATTGCTGAGGAGGATGTGTTAGATCAGGCACTCT
CCAGCCTCATGGTCCAGATGCCCAAGGAGACGTTTTTGTCACATCCTCCCCAAGATGCTGCTAATCTGGA
GAGTCTGATACCATCAGCAGAGAGAGAGCCGGCTGCCTTTCCCACCAACCATGAGAGGATGACTGAGAAC
CTTCCCTTCTCACAGAGGAGCAGTGAAATATTTCAGCGGCCTCTTTGGAACATGAACAGAGAACTGGGCC
TACTTCCCTTCTCCCAGCAGCCTGTCCTTGAGTCACCAGAGCTGACAGAGAGGGATCCAAATTGCTCTTC
ACCTGTGACTTGCCGCAGGTTACATGACCATGCTTTTGATTTTAGTAGGACTCGGATCATTCAAGATGGT
ACTGAGGGCACATGA

Translation (1054 aa):
MAAAPRGIWEQRRLGCGLGPLARLLILAQALRLLPAARAGLCPAPCACRLPLLDCSRRKLPAPSWRALSG
PLPSDISSLDLSHNRLSNWNNTLESQTLQEVKMNYNELTEIPYFGEPTPNITLLSLVHNLIPEINAEAFE
LYSALESLDLSSNIISEIKTSSFPRMSLKYLNLSNNRISTLEAGCFDNLSDSLLVVKLNRNRISMIPPKV
FKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTGVNKG
WLYGLRMLQQLYMSQNAIEKISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIA
DGVFRFLSNLQTLDLRNNDISWAIEDASEAFSGLKSLTKLILQGNRIKSVTQKAFIGLESLEYLDLNNNA
IMSIQENAFSQTHLKGLVLNTSSLLCDCHLKWLLQWLVDNNFHHSVNVSCAHPEWLAGQSILNVDLKDFV
CDDFLKPQIRTHPESTIALRGVNVTLTCTAVSSSDSPMSTIWRKDSEILYDVDIENFVRYRQQDGEALEY
TSVLRLFSVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEMPSFLKTPMDLTIRTGAMARLECAAEGHPTP
QISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNIAGGLSANASLTVLETPSFIRP
LEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCLMSNT
LGTERGHIYLNVISSPNCDSSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWVIVIYHMRRKNEDYSIT
NTEELNLPADIPSYLSSQGTLSEPQEGYSNSEAGSHQQLMPPANGYTHRGTDGGAGTRVICSDCYDNANI
YSRTREYCPYTYIAEEDVLDQALSSLMVQMPKETFLSHPPQDAANLESLIPSAEREPAAFPTNHERMTEN
LPFSQRSSEIFQRPLWNMNRELGLLPFSQQPVLESPELTERDPNCSSPVTCRRLHDHAFDFSRTRIIQDG
TEGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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