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Report for CCDS1770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1770.1 Public Homo sapiens 2 CLIP4 24 110 108 CCDS HistoryNCBI Gene:79745Re-query CCDS DB by CCDS ID:1770.1Re-query CCDS DB by GeneID:79745See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1770.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320081.10 ENSP00000327009.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320081.10Link to Ensembl Protein Viewer:ENSP00000327009.5Re-query CCDS DB by Nucleotide ID:ENST00000320081Re-query CCDS DB by Protein ID:ENSP00000327009
Original member Current member EBI ENST00000404424.5 ENSP00000385594.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404424.5Link to Ensembl Protein Viewer:ENSP00000385594.1Re-query CCDS DB by Nucleotide ID:ENST00000404424Re-query CCDS DB by Protein ID:ENSP00000385594
Original member Current member EBI ENST00000690063.1 ENSP00000508552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690063.1Link to Ensembl Protein Viewer:ENSP00000508552.1Re-query CCDS DB by Nucleotide ID:ENST00000690063Re-query CCDS DB by Protein ID:ENSP00000508552
Original member Current member EBI ENST00000693264.1 ENSP00000509159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693264.1Link to Ensembl Protein Viewer:ENSP00000509159.1Re-query CCDS DB by Nucleotide ID:ENST00000693264Re-query CCDS DB by Protein ID:ENSP00000509159
Original member Current member NCBI NM_001287527.2 NP_001274456.1 Accepted alive Link to Nucleotide Sequence:NM_001287527.2Link to Protein Sequence:NP_001274456.1Re-query CCDS DB by Nucleotide ID:NM_001287527Re-query CCDS DB by Protein ID:NP_001274456Link to BLAST:NP_001274456.1
Original member Current member NCBI NM_024692.6 NP_078968.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024692.6Link to Protein Sequence:NP_078968.3Re-query CCDS DB by Nucleotide ID:NM_024692Re-query CCDS DB by Protein ID:NP_078968Link to BLAST:NP_078968.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274456.1 705 Q8N3C7-1 705 100% 0 0
NP_078968.3 705 Q8N3C7-1 705 100% 0 0

Chromosomal Locations for CCDS 1770.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29121389 29121521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29131258 29131397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29132152 29132245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29133655 29133816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29135548 29135666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29143709 29143945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29145232 29145367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29152685 29152828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29156354 29156443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29157204 29157347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29160333 29160467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29163831 29163954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29167476 29167540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29174373 29174445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29181572 29181893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGACCATAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTGTTTGGAAGATACCCATTTATAT
TTTCTGCTTCTGATACCCCAGTTATCTTTTCCATTTCTGCAGCACCAATGCCTTCAGACTGTGAATTTTC
TTTCTTTGATCCTAATGATGCATCATGCCAGGAAATTCTTTTTGATCCCAAAACTTCAGTTTCAGAATTA
TTTGCCATTTTGAGACAGTGGGTTCCTCAGGTCCAACAAAACATTGACATTATTGGAAATGAGATTCTTA
AGAGAGGTTGCAATGTGAATGATAGAGATGGATTGACAGATATGACTCTTTTACATTATACCTGCAAATC
TGGAGCTCATGGTATTGGTGATGTGGAAACAGCTGTAAAATTTGCAACTCAGCTTATTGACCTGGGAGCA
GACATTAGTTTGCGGAGTCGCTGGACAAACATGAATGCTTTGCATTATGCTGCTTATTTTGATGTCCCTG
AACTTATAAGAGTGATTTTGAAAACATCGAAACCAAAAGATGTGGATGCCACTTGCAGTGATTTTAATTT
TGGAACAGCTTTGCATATTGCAGCATACAACTTGTGTGCAGGTGCTGTGAAGTGCCTCTTGGAGCAGGGA
GCAAATCCTGCATTTAGGAATGACAAAGGACAGATCCCTGCTGATGTTGTTCCAGACCCAGTAGATATGC
CGTTAGAGATGGCTGACGCCGCAGCCACTGCTAAGGAAATCAAGCAGATGCTTCTAGATGCGGTGCCTCT
GTCATGTAACATCTCAAAGGCCATGCTCCCAAATTATGATCATGTCACTGGCAAGGCAATGCTTACGTCA
CTTGGCCTGAAGTTGGGGGATCGTGTTGTTATTGCAGGACAGAAGGTTGGTACATTAAGATTTTGTGGAA
CAACTGAATTTGCAAGTGGGCAGTGGGCTGGCATTGAACTGGATGAACCAGAAGGAAAAAATAATGGAAG
TGTTGGAAAAGTCCAGTACTTTAAATGTGCCCCCAAGTATGGTATTTTTGCACCTCTTTCAAAGATAAGT
AAAGCAAAAGGTCGAAGGAAGAATATAACACACACTCCTTCTACAAAAGCTGCTGTACCTCTCATCAGGT
CCCAGAAAATTGACGTAGCTCATGTGACGTCAAAAGTAAATACTGGATTAATGACATCAAAAAAAGATAG
TGCTTCTGAGTCAACACTTTCATTGCCTCCTGGTGAAGAACTTAAAACTGTGACAGAGAAAGATGTTGCC
CTGCTTGGATCTGTCAGCAGCTGCTCCTCTACATCTTCTTTGGAACACAGACAGAGCTACCCCAAGAAAC
AGAATGCAATCAGCAGTAACAAGAAGACAATGAGCAAAAGCCCTTCCCTTTCATCCAGAGCCAGTGCTGG
TTTGAATTCCTCAGCAACATCTACAGCAAATAATAGCCGTTGCGAGGGGGAACTCCGCCTCGGAGAGAGA
GTGTTAGTGGTAGGACAGAGACTGGGCACCATTAGGTTCTTTGGGACAACAAACTTCGCTCCAGGATATT
GGTATGGTATAGAGCTTGAAAAACCCCATGGCAAGAATGATGGTTCAGTTGGAGGTGTGCAGTATTTTAG
CTGTTCTCCAAGATATGGAATATTTGCTCCCCCATCCAGGGTGCAAAGAGTAACAGATTCCCTGGATACC
CTTTCAGAAATTTCTTCAAATAAACAGAACCATTCTTATCCTGGTTTTAGGAGAAGTTTTAGCACAACTT
CTGCTTCTTCCCAAAAGGAGATTAACAGAAGAAATGCTTTTTCCAAATCGAAAGCTGCTTTGCGTCGCAG
TTGGAGCAGCACCCCCACCGCAGGTGGCATTGAAGGGAGCGTGAAGCTGCACGAGGGGTCTCAGGTCCTG
CTCACGAGCTCCAATGAGATGGGTACTGTTAGGTATGTGGGCCCCACTGACTTTGCTTCAGGTATCTGGC
TTGGACTTGAGCTCCGAAGCGCCAAGGGAAAAAATGATGGGTCAGTGGGTGACAAGCGCTATTTCACCTG
TAAGCCGAACCATGGAGTCTTAGTTCGACCGAGCAGAGTGACCTATCGGGGAATTAATGGGTCAAAACTT
GTGGATGAGAATTGTTAA

Translation (705 aa):
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCEFSFFDPNDASCQEILFDPKTSVSEL
FAILRQWVPQVQQNIDIIGNEILKRGCNVNDRDGLTDMTLLHYTCKSGAHGIGDVETAVKFATQLIDLGA
DISLRSRWTNMNALHYAAYFDVPELIRVILKTSKPKDVDATCSDFNFGTALHIAAYNLCAGAVKCLLEQG
ANPAFRNDKGQIPADVVPDPVDMPLEMADAAATAKEIKQMLLDAVPLSCNISKAMLPNYDHVTGKAMLTS
LGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKIS
KAKGRRKNITHTPSTKAAVPLIRSQKIDVAHVTSKVNTGLMTSKKDSASESTLSLPPGEELKTVTEKDVA
LLGSVSSCSSTSSLEHRQSYPKKQNAISSNKKTMSKSPSLSSRASAGLNSSATSTANNSRCEGELRLGER
VLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSLDT
LSEISSNKQNHSYPGFRRSFSTTSASSQKEINRRNAFSKSKAALRRSWSSTPTAGGIEGSVKLHEGSQVL
LTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRVTYRGINGSKL
VDENC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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