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Report for CCDS17595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17595.1 Public Mus musculus 3 Tuft1 23 108 98 CCDS HistoryNCBI Gene:22156Re-query CCDS DB by CCDS ID:17595.1Re-query CCDS DB by GeneID:22156See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006123.10 ENSMUSP00000006123.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006123.10Link to Ensembl Protein Viewer:ENSMUSP00000006123.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006123Re-query CCDS DB by Protein ID:ENSMUSP00000006123
Original member Current member NCBI NM_011656.3 NP_035786.1 Accepted alive Link to Nucleotide Sequence:NM_011656.3Link to Protein Sequence:NP_035786.1Re-query CCDS DB by Nucleotide ID:NM_011656Re-query CCDS DB by Protein ID:NP_035786Link to BLAST:NP_035786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035786.1 390 O08970-1 390 100% 0 0

Chromosomal Locations for CCDS 17595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94614128 94614191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94614724 94614824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94615770 94615853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94616622 94616727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94622051 94622145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94622688 94622816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94628197 94628310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94632597 94632662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94634458 94634547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94635409 94635495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94638925 94639026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94639395 94639469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94658725 94658784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGAACGGGACGCGGAACTGGTGTACCTTGGTGGACGTGCACCCGGAGAGCCAGACCGCGGGCAGCGTGG
ACATTCTCAGGCTGACGCTCCAGAGTGAACTGACAGGAGATGAACTTGAGCACATAGCCCAGAAGGCGGG
CAGGAAGACCTATGCCATGATGCCTGGCCACTCCTCAGGTCATTCTCTGGCTTCAGAACTGGTGGAGTCC
CATGATGGCCATGAAGAGATCATTAAGGTTTACTTGAAAGGGAGGTCTGGGGACAAGATGACCCATGAGA
AGAACATCGACCAGCTGAAGAGTGAGGTCCAGTACATCCAGGAGGCCAGGAACTGCCTGCAGAAGCTCCG
GGAGGATATAAGTAGCAAGCTTGACAGGAGTCCAGGAGACCCTCTGCGTCAGCAGGAGATACAGGTGGTA
CTAGAAAAGCCAAATGGCTTTAGTCAGAGTCCCATGACTCTCTACAGTAGCCCACCTGAGGTGGACCCTA
GCATGAGTGAAGATGTTGAGAGCTTGAAGAAGACTGTGCAGGAGTTGCTTGTCAAGCTGCGGGAGGCTGA
GCGGCGACACCAGTCAGACCGTGTGGCCTTTGAGGTCACACTCAGCCGTTATCAGCGAGAAGCAGAACAG
AGTAATGTGGCCCTTCAGAGAGAGGAGGACAGAGTGGAGCAGAAAGCGGCAGAAATCGAGGAGCTACAGA
GGCGCTTGCTGGGGATGGAGGCGGAGCATCAGGCCTTACTGGTGAAAGTCAGGGAAGGAGAGATGGCCCT
AGAAGAGCTTCGGATCAAGAACGCTGACTGTCAAACAGAAAGAGAAAAGTCTGCTGCTCTAGAAAAGGAA
GTGGCTGGGTTTCGGGAGAAGATCCACCACTTGGATGACATGCTGAAGAGCCAGCAGCGGAAAGTTCGGC
AGATGATAGAGCAGCTCCAGAATTCAAAAGCTGTGATCCAGTCAAAGGATGCCACCATTCAAGAGCTCAA
GGAGAAAATTGCCTATCTGGAGGCTGAGAACTTAGAGATGCACGACCGCATGGAGCATCTAATAGAGAAG
CAGGTCAGCCACGGAAACTTCAGCACACAGGCCCGTGCCAAGACAGAGAACCTGGGCAGTGTCAGGATAT
CGAAGCCCCCCAGCCCCAAGCCTATGCCTCTCATCCGGGTGGTGGAAACCTGA

Translation (390 aa):
MNGTRNWCTLVDVHPESQTAGSVDILRLTLQSELTGDELEHIAQKAGRKTYAMMPGHSSGHSLASELVES
HDGHEEIIKVYLKGRSGDKMTHEKNIDQLKSEVQYIQEARNCLQKLREDISSKLDRSPGDPLRQQEIQVV
LEKPNGFSQSPMTLYSSPPEVDPSMSEDVESLKKTVQELLVKLREAERRHQSDRVAFEVTLSRYQREAEQ
SNVALQREEDRVEQKAAEIEELQRRLLGMEAEHQALLVKVREGEMALEELRIKNADCQTEREKSAALEKE
VAGFREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEK
QVSHGNFSTQARAKTENLGSVRISKPPSPKPMPLIRVVET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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