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Report for CCDS17425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17425.1 Public Mus musculus 3 Pdgfc 23 108 98 CCDS HistoryNCBI Gene:54635Re-query CCDS DB by CCDS ID:17425.1Re-query CCDS DB by GeneID:54635See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029652.3 ENSMUSP00000029652.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029652.3Link to Ensembl Protein Viewer:ENSMUSP00000029652.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029652Re-query CCDS DB by Protein ID:ENSMUSP00000029652
Original member Current member NCBI NM_019971.3 NP_064355.1 Accepted alive Link to Nucleotide Sequence:NM_019971.3Link to Protein Sequence:NP_064355.1Re-query CCDS DB by Nucleotide ID:NM_019971Re-query CCDS DB by Protein ID:NP_064355Link to BLAST:NP_064355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064355.1 345 Q8CI19 345 100% 0 0

Chromosomal Locations for CCDS 17425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 81037437 81037554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81141405 81141600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81174816 81174996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81204235 81204442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81209044 81209261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81212462 81212578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCTCCTCCTCGGCCTCCTCCTGCTGACATCTGCCCTGGCCGGCCAAAGAACGGGGACTCGGGCTGAGT
CCAACCTGAGCAGCAAGTTGCAGCTCTCCAGCGACAAGGAACAGAACGGAGTGCAAGATCCCCGGCATGA
GAGAGTTGTCACTATATCTGGTAATGGGAGCATCCACAGCCCGAAGTTTCCTCATACATACCCAAGAAAT
ATGGTGCTGGTGTGGAGATTAGTTGCAGTAGATGAAAATGTGCGGATCCAGCTGACATTTGATGAGAGAT
TTGGGCTGGAAGATCCAGAAGACGATATATGCAAGTATGATTTTGTAGAAGTTGAGGAGCCCAGTGATGG
AAGTGTTTTAGGACGCTGGTGTGGTTCTGGGACTGTGCCAGGAAAGCAGACTTCTAAAGGAAATCATATC
AGGATAAGATTTGTATCTGATGAGTATTTTCCATCTGAACCCGGATTCTGCATCCACTACAGTATTATCA
TGCCACAAGTCACAGAAACCACGAGTCCTTCGGTGTTGCCCCCTTCATCTTTGTCATTGGACCTGCTCAA
CAATGCTGTGACTGCCTTCAGTACCTTGGAAGAGCTGATTCGGTACCTAGAGCCAGATCGATGGCAGGTG
GACTTGGACAGCCTCTACAAGCCAACATGGCAGCTTTTGGGCAAGGCTTTCCTGTATGGGAAAAAAAGCA
AAGTGGTGAATCTGAATCTCCTCAAGGAAGAGGTAAAACTCTACAGCTGCACACCCCGGAACTTCTCAGT
GTCCATACGGGAAGAGCTAAAGAGGACAGATACCATATTCTGGCCAGGTTGTCTCCTGGTCAAGCGCTGT
GGAGGAAATTGTGCCTGTTGTCTCCATAATTGCAATGAATGTCAGTGTGTCCCACGTAAAGTTACAAAAA
AGTACCATGAGGTCCTTCAGTTGAGACCAAAAACTGGAGTCAAGGGATTGCATAAGTCACTCACTGATGT
GGCTCTGGAACACCACGAGGAATGTGACTGTGTGTGTAGAGGAAACGCAGGAGGGTAA

Translation (345 aa):
MLLLGLLLLTSALAGQRTGTRAESNLSSKLQLSSDKEQNGVQDPRHERVVTISGNGSIHSPKFPHTYPRN
MVLVWRLVAVDENVRIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGSVLGRWCGSGTVPGKQTSKGNHI
RIRFVSDEYFPSEPGFCIHYSIIMPQVTETTSPSVLPPSSLSLDLLNNAVTAFSTLEELIRYLEPDRWQV
DLDSLYKPTWQLLGKAFLYGKKSKVVNLNLLKEEVKLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRC
GGNCACCLHNCNECQCVPRKVTKKYHEVLQLRPKTGVKGLHKSLTDVALEHHEECDCVCRGNAGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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