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Report for CCDS17410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17410.1 Public Mus musculus 3 Slitrk3 23 108 98 CCDS HistoryNCBI Gene:386750Re-query CCDS DB by CCDS ID:17410.1Re-query CCDS DB by GeneID:386750See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059407.8 ENSMUSP00000088561.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059407.8Link to Ensembl Protein Viewer:ENSMUSP00000088561.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059407Re-query CCDS DB by Protein ID:ENSMUSP00000088561
Original member Current member EBI ENSMUST00000192477.1 ENSMUSP00000141236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192477.1Link to Ensembl Protein Viewer:ENSMUSP00000141236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192477Re-query CCDS DB by Protein ID:ENSMUSP00000141236
Original member Current member NCBI NM_001357851.1 NP_001344780.1 Accepted alive Link to Nucleotide Sequence:NM_001357851.1Link to Protein Sequence:NP_001344780.1Re-query CCDS DB by Nucleotide ID:NM_001357851Re-query CCDS DB by Protein ID:NP_001344780Link to BLAST:NP_001344780.1
Original member Current member NCBI NM_198864.3 NP_942564.2 Accepted alive Link to Nucleotide Sequence:NM_198864.3Link to Protein Sequence:NP_942564.2Re-query CCDS DB by Nucleotide ID:NM_198864Re-query CCDS DB by Protein ID:NP_942564Link to BLAST:NP_942564.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344780.1 980 Q810B9 980 100% 0 0
NP_942564.2 980 Q810B9 980 100% 0 0

Chromosomal Locations for CCDS 17410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 73048495 73051437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGATGAAGCCAAGCATAGCTGAAATGCTTCACAGAGGAAGAATGCTGTGGATAATTCTTCTAAGCACAA
TTGCTCTAGGATGGACTACCCCAATTCCCCTGATAGAGGACTCAGAAGAAATAGATGAGCCCTGTTTTGA
TCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTCACATACATTGTGACAGCAAGGGATTTACAAACATT
AGTCAGATTACTGAGTTCTGGTCAAGACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAGAAGACTAT
ACACAAACAGTTTTCTTCACTTGAATAATGCGGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACAT
TCAAACTGGAGCATTTAATGGCCTTAAGATTTTAAAGAGACTGTATCTCCATGAGAACAAACTAGATGTC
TTCAGAAATGACACCTTCCTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGATTACAATGTCATTAAAC
GTATAGAGAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTAATCTTAAATGATAATCTCATCCC
CGTGCTTCCAACCAATTTATTTAAAGCTGTTTCCTTAACGCATCTGGACCTTCGTGGGAACAGGTTAAAG
GTTCTCTTCTACCGTGGGATGCTGGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCTAGAAGAGAATC
CTTGGAACTGTACCTGTGAGATAGTACAGCTGAAGAGTTGGCTGGAGCGAATACCTTACACAGCCCTGGT
GGGAGACATTACCTGTGAGACACCTTTCCATTTCCATGGGAAGGATCTCCGTGAAATCAAGAAGACTGAA
CTCTGTCCACTGTTGTCTGACTCTGAGGTGGAGGCCAGTCTGGGGATTCCCCACTTATCTTCAAGCAAGG
AGAATGCCTGGCCAACTAAACCTTCCTCTATGTTGTCTTCTGTCCATTTTACTGCTTCATCTGTTGAATA
TAAGTCCTCTAATAAGCAACCAAAACCCACCAAACAGCCCAGAACACCGAGACCACCTTCGACATCCCAG
GCTTTATATCCTGGTCCAAATCAACCTCCTATTGCCCCCTATCAGACTAGACCACCCATTCCCATTATAT
GTCCTACTGGGTGTACATGCAATTTGCATATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAAAGAGG
ATTTAACAACATCTCTGAACTCCTTCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGAGCAGCAATCTT
ATTCAGAAGATATACCGCTCTGATTTTTGGAATTTTTCTTCTTTGGATCTCTTGCACCTAGGGAACAATC
GCATTTCCTACGTCCAGGATGGGGCTTTCATCAACCTGCCCAACCTGAAGAGTCTCTTTCTCAATGGCAA
TGATATAGAAAAGCTGACTCCAGGTATGTTCCGAGGTCTGCAGAGCTTGCATTACTTGTACTTCGAATTC
AACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATTTCTCAACA
ATAACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCAGGTACATCCCTGGCTCGGCTCAACTTGAGGAA
GAACTACTTTCTCTACCTGCCAGTGGCTGGTGTCCTTGAACACCTGAATGCCATTGTGCAGATAGATCTC
AACGAGAATCCTTGGGACTGCACTTGCGACTTAGTCCCCTTTAAGCAGTGGATCGAAACCATCAGCTCAG
TCAGCGTGGTAGGTGATGTACTCTGTAGGACCCCCGAGAACCTCACCCACCGTGATGTGCGCACTATTGA
GCTGGAAGTTTTATGCCCAGAGATGCTGCATATTGCCCAACCTGGACCATCTCCACCCCAGCCTGGAGAT
TACCACCCTAACGGGGGACCAACAAGTGCATCACCTTATGAGTTCTCTCCCCCAGGGGGCCCTGTGCCAC
TTTCTGTGTTGATTCTCAGCCTCTTGGTTCTGTTCTTCTCAGCTGTCTTTGTTGCTGCAGGCCTCTTTGC
CTATGTGCTCCGTCGGCGTAGGAAGAAGTTGCCCTTTAGAAGCAAGAGACAAGAAGGTGTGGACCTTACA
GGAATCCAGATGCAATGTCACCGGCTGTTTGAGGACAGTGGAGGCAACAGTGGTGGGAGTGGAGGTGGAG
GGCGACCAACTCTGTCCTCGCCAGAGAAAGCCCCTCCCGTGGGTCACGTGTACGAGTATATACCCCACCC
AGTAACTCAGATGTGTAACAACCCCATCTATAAGCCTCGAGAGGAGGAAGAAGTGGCTGCCTCAGCAGCC
CAGGACACAGGAGCTACAGACCGTGGAGGTCCTGGTACACAACCAACAGGAATGGCTGAGGTGCTCTTGG
GAAGTGAGCAGTTTGCAGAAACACCCAAGGAGAACCACAGTAACTACAGGACCTTGCTGGAAAAAGAGAA
GGAGTGGGCTCTGGCTGTTTCCAACTCTCAACTTAACACCATAGTGACGGTGAACCATCACCACCCTCAC
CCTCACCACTCGGCAGTTGGTGGGGTTTCAGGGGTAGGTGGAGGGACTGGGGGAGACTTGGCTGGGTTCC
GCCACCATGAGAAGAATGGTGGGGTGGTGCTGTTTCCCCCTGGGGGAGGTTGTGGTGGTGGCAGTCTGCT
ACTAGACCGTGAGAGGCCACAGCCTGCTCCGTGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTG
CCCAAATTAAAGGAACTCCATGTCCACCCCCCTGGCATGCAATATCCAGACTTACAGCAGGATGCCAGGC
TCAAAGAAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCCCAAAAGTGATTACCT
CGACTTAAGGGCCAAACTTCAAACTAAGCCGGATTACCTCGAAGTTCTGGAGAAAACAGCATACAGGTTC
TAA

Translation (980 aa):
MMKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNI
SQITEFWSRPFKLYLQRNSMRRLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDV
FRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNLFKAVSLTHLDLRGNRLK
VLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIKKTE
LCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQ
ALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNL
IQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEF
NVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDL
NENPWDCTCDLVPFKQWIETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSPPQPGD
YHPNGGPTSASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLT
GIQMQCHRLFEDSGGNSGGSGGGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASAA
QDTGATDRGGPGTQPTGMAEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVTVNHHHPH
PHHSAVGGVSGVGGGTGGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLDRERPQPAPCTVGFVDCLYGTV
PKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRAKLQTKPDYLEVLEKTAYRF


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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