NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17293.1 Public Mus musculus 3 Zmat3 23 108 98 CCDS HistoryNCBI Gene:22401Re-query CCDS DB by CCDS ID:17293.1Re-query CCDS DB by GeneID:22401See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029199.10 ENSMUSP00000029199.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029199.10Link to Ensembl Protein Viewer:ENSMUSP00000029199.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029199Re-query CCDS DB by Protein ID:ENSMUSP00000029199
Original member Current member EBI ENSMUST00000168566.2 ENSMUSP00000131317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168566.2Link to Ensembl Protein Viewer:ENSMUSP00000131317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168566Re-query CCDS DB by Protein ID:ENSMUSP00000131317
Original member Current member NCBI NM_009517.2 NP_033543.2 Accepted alive Link to Nucleotide Sequence:NM_009517.2Link to Protein Sequence:NP_033543.2Re-query CCDS DB by Nucleotide ID:NM_009517Re-query CCDS DB by Protein ID:NP_033543Link to BLAST:NP_033543.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033543.2 290 O54836 290 99.6552% 0 1

Chromosomal Locations for CCDS 17293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32341484 32341695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32343334 32343434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32343552 32343718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32345458 32345580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32360890 32361159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGATTCTTTTGCAGCAGGTCTGGCTTCCTTTACCTAATCGGCCTTCAACCTCTCCTCCTATGTCAGTGG
CTGCCAGGTCCACAAGGACCTTGCAGCTCCCGCCACAGAAGGCTTTTGGGCAGGAAGCATCCTTGCCTCT
GGCAGGGGAAGAGGATTTAGCTAAGAGAGGGGAGCCAGACTCTGCCCTGGAGGAGCTGTGTAAGCCCCTC
TTCTGCAAACTCTGCAATGTCACCTTGAACTCCGCTCAGCAAGCCCAGGCACACTATCAGGGTAAAAACC
ATGGCAAGAAACTACGAAATTATTACGCAGCTAACAGCTGTCCTCCTCCAGCCAGGGTGAGCAGCGTGGT
GGCAGAGCCTGTAGCCACACCCCTCGTTCCTGTCCCTCCGCAGGTGGGCTCCTGCAAGCCAGGGGGCAGG
GTGATCCTGGCTACAGAGAATGACTACTGTAAGCTGTGCGATGCCTCCTTCAGCTCCCCTGCCGTGGCAC
AGGCGCACTACCAGGGGAAGAACCATGCCAAGAGACTCCGTCTGGCCGAAGCTCAGAGTCACTCATTCTC
GGACTCCGCAGAGGCAGGGCAACGGCGGACTCGGAAAGAAGGGAGTGAATTTAAGATGGTGGCCACCAGG
AGGAATATGTATCCAGTCCAGAGCAATTCAGGCCCTTACTTCAATGCCCGCTCCCGGCAGAGGATCCCGC
GAGATCTCGCCATGTGCGTGACTCCAAGTGGCCAGTTTTACTGCTCCATGTGTAACGTTGGGGCTGGCGA
AGAGGTGGAGTTCCGGCAGCATCTAGAGAGCAAGCAGCACAAAAGCAAGGTGTCCGAGCAGCGGTACAGG
AGCGAGATGGAGAACCTGGGCTACGTTCAGTGA

Translation (290 aa):
MILLQQVWLPLPNRPSTSPPMSVAARSTRTLQLPPQKAFGQEASLPLAGEEDLAKRGEPDSALEELCKPL
FCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARVSSVVAEPVATPLVPVPPQVGSCKPGGR
VILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSHSFSDSAEAGQRRTRKEGSEFKMVATR
RNMYPVQSNSGPYFNARSRQRIPRDLAMCVTPSGQFYCSMCNVGAGEEVEFRQHLESKQHKSKVSEQRYR
SEMENLGYVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH