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Report for CCDS17197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17197.1 Public Mus musculus 2 Kcnq2 23 108 98 CCDS HistoryNCBI Gene:16536Re-query CCDS DB by CCDS ID:17197.1Re-query CCDS DB by GeneID:16536See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081528.12 ENSMUSP00000080243.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081528.12Link to Ensembl Protein Viewer:ENSMUSP00000080243.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081528Re-query CCDS DB by Protein ID:ENSMUSP00000080243
Original member Current member NCBI NM_001006674.2 NP_001006675.1 Accepted alive Link to Nucleotide Sequence:NM_001006674.2Link to Protein Sequence:NP_001006675.1Re-query CCDS DB by Nucleotide ID:NM_001006674Re-query CCDS DB by Protein ID:NP_001006675Link to BLAST:NP_001006675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006675.1 570 Q9Z351-5 570 99.8246% 0 1

Chromosomal Locations for CCDS 17197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181076172 181076202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181086969 181087100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181087575 181087683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181088347 181088570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181096950 181096979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181100550 181100618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181104887 181104981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181109022 181109117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181109675 181109785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181112000 181112125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181113063 181113238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181113572 181113698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181114639 181114729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181134797 181135092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGTGCAGAAGTCGCGCAACGGTGGCGTGTACCCCGGCACCAGCGGGGAAAAGAAGCTCAAGGTGGGCT
TCGTGGGGCTGGACCCCGGCGCGCCCGACTCCACACGCGACGGCGCGCTACTCATCGCGGGCTCCGAGGC
CCCCAAGCGCGGCAGCGTTTTGAGCAAGCCGCGGACGGGCGGCGCGGGAGCCGGGAAGCCCCCGAAGCGC
AACGCCTTCTACCGCAAGCTGCAGAATTTCCTCTACAACGTGCTAGAGCGGCCCCGCGGCTGGGCGTTCA
TCTACCACGCCTACGTGTTCCTTTTAGTCTTCTCCTGCCTTGTGCTTTCTGTGTTTTCCACCATCAAGGA
GTACGAGAAGAGCTCTGAGGGGGCCCTCTACATCTTGGAAATCGTGACTATCGTGGTATTCGGTGTTGAG
TACTTTGTGAGGATCTGGGCTGCAGGCTGCTGTTGCCGGTATCGAGGCTGGAGGGGCAGGCTCAAGTTTG
CCAGGAAGCCGTTCTGTGTGATTGATATCATGGTGCTGATTGCCTCCATTGCTGTGCTGGCTGCTGGTTC
CCAGGGCAATGTCTTTGCCACATCTGCGCTTCGGAGCTTGCGGTTCTTGCAAATCTTGCGGATGATCCGT
ATGGACCGGAGGGGTGGCACCTGGAAGCTCTTGGGATCGGTAGTCTACGCTCACAGCAAGGAGCTGGTGA
CTGCCTGGTACATTGGCTTCCTCTGCCTCATCCTGGCCTCATTTCTGGTGTACTTGGCAGAAAAGGGTGA
GAATGACCACTTTGACACCTACGCAGATGCACTCTGGTGGGGTCTGATCACCCTGACGACCATTGGCTAC
GGGGACAAGTACCCTCAGACCTGGAACGGGAGGCTGCTGGCAGCGACCTTTACCCTCATTGGTGTCTCGT
TCTTTGCTCTTCCTGCTGGCATTTTGGGATCCGGCTTTGCCCTGAAAGTCCAAGAGCAGCATCGGCAAAA
ACACTTTGAGAAACGGCGGAACCCTGCGGCAGGTCTGATCCAGTCTGCCTGGAGATTCTATGCTACTAAC
CTCTCACGCACCGACCTGCACTCCACGTGGCAGTACTACGAGCGGACAGTCACTGTCCCCATGTACAGAC
TCATCCCACCTCTGAACCAGCTGGAGCTGCTGAGGAATCTCAAGAGCAAATCTGGACTCACCTTCAGGAA
GGAGCCACAGCCAGAGCCATCACCAAGTCAGAAGGTCAGTTTGAAAGATCGTGTCTTCTCCAGCCCCCGA
GGCATGGCTGCCAAGGGAAAGGGGTCTCCCCAGGCCCAGACGGTCCGGCGGTCCCCCAGTGCGGATCAGA
GTCTTGATGACAGCCCGAGCAAGGTGCCCAAGAGCTGGAGCTTTGGTGACCGCAGCCGCACACGCCAGGC
TTTCCGCATCAAGGGTGCTGCATCCCGGCAGAATTCAGAAGAAGCAAGCCTCCCTGGGGAGGACATCGTA
GAGGACAACAAGAGCTGTAACTGCGAGTTTGTGACTGAAGATCTTACCCCTGGCCTCAAAGTTAGCATCA
GAGCTGTGTGTGTTATGCGGTTCTTGGTATCTAAGCGAAAGTTCAAAGAGAGTCTGCGCCCATATGATGT
GATGGACGTCATCGAACAGTACTCGGCTGGACACTTGGATATGTTGTCCCGCATCAAGAGCCTGCAGTCC
AGGTCCTGCGACTGGAGAGGAGTGCTGGCATGA

Translation (570 aa):
MVQKSRNGGVYPGTSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSVLSKPRTGGAGAGKPPKR
NAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVE
YFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIR
MDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGY
GDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATN
LSRTDLHSTWQYYERTVTVPMYRLIPPLNQLELLRNLKSKSGLTFRKEPQPEPSPSQKVSLKDRVFSSPR
GMAAKGKGSPQAQTVRRSPSADQSLDDSPSKVPKSWSFGDRSRTRQAFRIKGAASRQNSEEASLPGEDIV
EDNKSCNCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKSLQS
RSCDWRGVLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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