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Report for CCDS17075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17075.1 Public Mus musculus 2 Elmo2 23 108 98 CCDS HistoryNCBI Gene:140579Re-query CCDS DB by CCDS ID:17075.1Re-query CCDS DB by GeneID:140579See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094329.10 ENSMUSP00000091887.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094329.10Link to Ensembl Protein Viewer:ENSMUSP00000091887.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094329Re-query CCDS DB by Protein ID:ENSMUSP00000091887
Original member Current member EBI ENSMUST00000103091.8 ENSMUSP00000099380.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103091.8Link to Ensembl Protein Viewer:ENSMUSP00000099380.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000103091Re-query CCDS DB by Protein ID:ENSMUSP00000099380
Original member Current member NCBI NM_001302752.1 NP_001289681.1 Accepted alive Link to Nucleotide Sequence:NM_001302752.1Link to Protein Sequence:NP_001289681.1Re-query CCDS DB by Nucleotide ID:NM_001302752Re-query CCDS DB by Protein ID:NP_001289681Link to BLAST:NP_001289681.1
Original member Current member NCBI NM_080287.2 NP_525026.2 Accepted alive Link to Nucleotide Sequence:NM_080287.2Link to Protein Sequence:NP_525026.2Re-query CCDS DB by Nucleotide ID:NM_080287Re-query CCDS DB by Protein ID:NP_525026Link to BLAST:NP_525026.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289681.1 720 Q8BHL5-2 720 100% 0 0
NP_525026.2 720 Q8BHL5-2 720 100% 0 0

Chromosomal Locations for CCDS 17075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165290361 165290561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165292105 165292182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165294241 165294323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165295014 165295121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165295244 165295356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165295463 165295626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165296841 165296977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165297347 165297455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165297541 165297645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165298209 165298343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165298620 165298742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165301941 165301991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165304900 165304978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165308913 165309064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165310175 165310274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165311623 165311804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165314731 165314781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165315604 165315676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165315998 165316038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165316239 165316316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGCCGCCTCCGTCTGACATTGTCAAAGTGGCCATCGAGTGGCCAGGTGCTAACGCCCAGCTCCTTGAAA
TTGACCAGAAACGGCCGCTGGCATCCATCATCAAGGAGGTGTGCGATGGGTGGTCACTGCCGAACCCGGA
GTACTACACCCTCCGCTATGCAGATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGAAATGACATTAAG
AACGGGACAATCTTACAACTGGCCGTCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAAAGGACCCAGT
CATCTAGTATGGAGACCCGGCTGGATGCCATGAAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTCGC
CACGGAGTTCATTAACATGGACGGCATCATTGTGCTGACGAGGCTCGTGGAGAGTGGGACCAAGCTCCTG
TCCCACTACAGTGAGATGCTGGCATTCACCCTGACTGCCTTCTTAGAGCTCATGGATCATGGCATTGTCT
CCTGGGACATGGTTTCAGTCACCTTTATTAAGCAGATTGCAGGGTACGTGAGCCAGCCCATGGTCGATGT
GTCCATCCTCCAGCGGTCCCTGGCCATCCTAGAGAGCATGGTACTAAACAGCCAGAGCCTGTACCAGAAG
ATAGCGGAGGAGATCACCGTGGGACAGCTCATCTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGACCT
ACGCCATTGCTCTGATTAACGCGCTGTTCCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGCCAATGC
CTTTGCACAGAAGCACCTTCGGTCCATAATCCTGAACCATGTGATCAGAGGGAATCGTCCAATCAAAACA
GAGATGGCCCATCAGCTGTATGTCCTTCAGGTCTTGACCTTTAACCTTCTGGAAGAAAGAATGATGACCA
AGATGGATCCCAATGACCAGGCTCAGAGAGACATTATATTTGAACTGAGGAGGATTGCCTTCGACGCAGA
GTCTGACCCCAGCAACGTCCCCGGGAGTGGGACTGAAAAGCGCAAGGCCATGTATACCAAGGACTATAAA
ATGCTGGGCTTCACCAACCATATCAACCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAATGCTGGCGC
TGGACAACATGCTGTACCTGGCTAAAGTCCACCAGGACACCTACATCCGGATCGTGCTGGAGAACAGCAG
TCGGGAGGACAAACACGAGTGTCCGTTCGGCCGCAGTGCCATCGAGCTCACCAAGATGCTCTGTGAGATC
CTGCAGGTCGGGGAGCTCCCTAATGAAGGGCGCAATGACTACCACCCCATGTTCTTCACCCACGACCGAG
CCTTCGAGGAACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGACCTGGAAGGAGATGAGGGCGACAGC
CGAGGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAGATCACCCGGGCTCTGCCCTCTAAACCCAAC
TCTTTGGATCAGTTCAAGAGTAAACTTCGTAGCCTGAGCTACTCAGAAATTCTGCGGTTGCGCCAGTCTG
AGAGGATGAGCCAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGAGAGAAGATACAGCCTGAGAT
CCTGGAGCTGATCAAGCAACAGCGCCTCAACCGGCTATGCGAGGGCAGCAGCTTCCGGAAAATCGGGAAC
CGTCGTCGGCAAGAGAGGTTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTTTTGCATTACGGTGACT
TGGATGACAACCCTCAAGGGGAGGTGACATTCGAATCCCTGCAGGAGAAAATTCCTGTTGCAGATATTAA
GGCCATTGTTACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAGTGCCCTGAAACAGAACAAGGAGGTG
TTGGAATTGGCCTTCTCCATCCTGTATGATCCTGATGAGACACTGAATTTCATTGCTCCCAACAAGTATG
AGTACTGCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGAG
CGACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGCGGCTTCTGGACTTGGAGAACATTCAGATCCCC
GAGGCGCCACCTCCGGTCCCCAAGGAGCCCAGCAGCTATGACTTCGTCTATCACTATGGCTGA

Translation (720 aa):
MPPPSDIVKVAIEWPGANAQLLEIDQKRPLASIIKEVCDGWSLPNPEYYTLRYADGPQLYVTEQTRNDIK
NGTILQLAVSPSRAARQLMERTQSSSMETRLDAMKELAKLSADVTFATEFINMDGIIVLTRLVESGTKLL
SHYSEMLAFTLTAFLELMDHGIVSWDMVSVTFIKQIAGYVSQPMVDVSILQRSLAILESMVLNSQSLYQK
IAEEITVGQLISHLQVSNQEIQTYAIALINALFLKAPEDKRQDMANAFAQKHLRSIILNHVIRGNRPIKT
EMAHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNVPGSGTEKRKAMYTKDYK
MLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKMLCEI
LQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPN
SLDQFKSKLRSLSYSEILRLRQSERMSQDDFQSPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGN
RRRQERFWHCRLALNHKVLHYGDLDDNPQGEVTFESLQEKIPVADIKAIVTGKDCPHMKEKSALKQNKEV
LELAFSILYDPDETLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIP
EAPPPVPKEPSSYDFVYHYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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