NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
165.1 Public Homo sapiens 1 ZBTB17 24 110 108 CCDS HistoryNCBI Gene:7709Re-query CCDS DB by CCDS ID:165.1Re-query CCDS DB by GeneID:7709See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 165.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375743.9 ENSP00000364895.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375743.9Link to Ensembl Protein Viewer:ENSP00000364895.4Re-query CCDS DB by Nucleotide ID:ENST00000375743Re-query CCDS DB by Protein ID:ENSP00000364895
Original member Current member NCBI NM_003443.3 NP_003434.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003443.3Link to Protein Sequence:NP_003434.2Re-query CCDS DB by Nucleotide ID:NM_003443Re-query CCDS DB by Protein ID:NP_003434Link to BLAST:NP_003434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003434.2 803 Q13105-1 803 100% 0 0

Chromosomal Locations for CCDS 165.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15941969 15942252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15942331 15942420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15942529 15942738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15943064 15943194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15943399 15943519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15943599 15943715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15943808 15943895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15944300 15944600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15944697 15944839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15944937 15945202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15945715 15945840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15946154 15946294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15946935 15947123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15948291 15948495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGGACTTTCCCCAGCACAGCCAGCATGTCTTGGAACAGCTGAACCAGCAGCGGCAGCTGGGGCTTCTCT
GTGACTGCACCTTTGTGGTGGACGGTGTTCACTTTAAGGCTCATAAAGCAGTGCTGGCGGCCTGCAGCGA
GTACTTCAAGATGCTCTTCGTGGACCAGAAGGACGTGGTGCACCTGGACATCAGTAACGCGGCAGGCCTG
GGGCAGGTGCTGGAGTTTATGTACACGGCCAAGCTGAGCCTGAGCCCTGAGAACGTGGATGATGTGCTGG
CCGTGGCCACTTTCCTCCAAATGCAGGACATCATCACGGCCTGCCATGCCCTCAAGTCACTTGCTGAGCC
GGCTACCAGCCCTGGGGGAAATGCGGAGGCCTTGGCCACAGAAGGAGGGGACAAGAGAGCCAAAGAGGAG
AAGGTGGCCACCAGCACGCTGAGCAGGCTGGAGCAGGCAGGACGCAGCACACCCATAGGCCCCAGCAGGG
ACCTCAAGGAGGAGCGCGGCGGTCAGGCCCAGAGTGCGGCCAGCGGTGCAGAGCAGACAGAGAAAGCCGA
TGCGCCCCGGGAGCCGCCGCCTGTGGAGCTCAAGCCAGACCCCACGAGTGGCATGGCTGCTGCAGAAGCT
GAGGCCGCTTTGTCCGAGAGCTCGGAGCAAGAAATGGAGGTGGAGCCCGCCCGGAAAGGGGAAGAGGAGC
AAAAGGAGCAAGAGGAGCAAGAGGAGGAGGGCGCAGGGCCAGCTGAGGTCAAGGAGGAGGGTTCCCAGCT
GGAGAACGGAGAGGCCCCCGAGGAGAACGAGAATGAGGAGTCAGCGGGCACAGACTCGGGGCAGGAGCTC
GGCTCCGAGGCCCGGGGCCTGCGCTCAGGCACCTACGGCGACCGCACGGAGTCCAAGGCCTACGGCTCCG
TCATCCACAAGTGCGAGGACTGTGGGAAGGAGTTCACGCACACGGGGAACTTCAAGCGGCACATCCGCAT
CCACACGGGGGAGAAGCCCTTCTCGTGCCGGGAGTGCAGCAAGGCCTTTTCCGACCCGGCCGCGTGCAAG
GCCCATGAGAAGACGCACAGCCCTCTGAAGCCCTACGGCTGCGAGGAGTGCGGGAAGAGCTACCGCCTCA
TCAGCCTGCTGAACCTGCACAAGAAGCGGCACTCGGGCGAGGCGCGCTACCGCTGCGAGGACTGCGGCAA
GCTCTTCACCACCTCGGGCAACCTCAAGCGCCACCAGCTGGTGCACAGCGGCGAGAAGCCCTACCAGTGC
GACTACTGCGGCCGCTCCTTCTCCGACCCCACTTCCAAGATGCGCCACCTGGAGACCCACGACACGGACA
AGGAGCACAAGTGCCCACACTGCGACAAGAAGTTCAACCAGGTAGGGAACCTGAAGGCCCACCTGAAGAT
CCACATCGCTGACGGGCCCCTCAAGTGCCGAGAGTGTGGGAAGCAGTTCACCACCTCAGGGAACCTGAAG
CGGCACCTTCGGATCCACAGCGGGGAGAAGCCCTACGTGTGCATCCACTGCCAGCGACAGTTTGCAGACC
CCGGCGCTCTGCAGCGGCACGTCCGCATTCACACAGGTGAGAAGCCATGCCAGTGTGTGATGTGCGGTAA
GGCCTTCACCCAGGCCAGCTCCCTCATCGCCCACGTGCGCCAGCACACCGGGGAGAAGCCCTACGTCTGC
GAGCGCTGCGGCAAGAGATTCGTCCAGTCCAGCCAGTTGGCCAATCATATTCGCCACCACGACAACATCC
GCCCACACAAGTGCAGCGTGTGCAGCAAGGCCTTCGTGAACGTGGGGGACCTGTCCAAGCACATCATCAT
TCACACTGGAGAGAAGCCTTACCTGTGTGATAAGTGTGGGCGTGGCTTCAACCGGGTAGACAACCTGCGC
TCCCACGTGAAGACCGTGCACCAGGGCAAGGCAGGCATCAAGATCCTGGAGCCCGAGGAGGGCAGTGAGG
TCAGCGTGGTCACTGTGGATGACATGGTCACGCTGGCTACCGAGGCACTGGCAGCGACAGCCGTCACTCA
GCTCACAGTGGTGCCGGTGGGAGCTGCAGTGACAGCCGATGAGACGGAAGTCCTGAAGGCCGAGATCAGC
AAAGCTGTGAAGCAAGTGCAGGAAGAAGACCCCAACACTCACATCCTCTACGCCTGTGACTCCTGTGGGG
ACAAGTTTCTGGATGCCAACAGCCTGGCTCAGCATGTGCGAATCCACACAGCCCAGGCACTGGTCATGTT
CCAGACAGACGCGGACTTCTATCAGCAGTATGGGCCAGGTGGCACGTGGCCTGCCGGGCAGGTGCTGCAG
GCTGGGGAGCTGGTCTTCCGCCCTCGCGACGGGGCTGAGGGCCAGCCCGCACTGGCAGAGACCTCCCCTA
CAGCTCCTGAATGTCCCCCGCCTGCCGAGTGA

Translation (803 aa):
MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGL
GQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAEPATSPGGNAEALATEGGDKRAKEE
KVATSTLSRLEQAGRSTPIGPSRDLKEERGGQAQSAASGAEQTEKADAPREPPPVELKPDPTSGMAAAEA
EAALSESSEQEMEVEPARKGEEEQKEQEEQEEEGAGPAEVKEEGSQLENGEAPEENENEESAGTDSGQEL
GSEARGLRSGTYGDRTESKAYGSVIHKCEDCGKEFTHTGNFKRHIRIHTGEKPFSCRECSKAFSDPAACK
AHEKTHSPLKPYGCEECGKSYRLISLLNLHKKRHSGEARYRCEDCGKLFTTSGNLKRHQLVHSGEKPYQC
DYCGRSFSDPTSKMRHLETHDTDKEHKCPHCDKKFNQVGNLKAHLKIHIADGPLKCRECGKQFTTSGNLK
RHLRIHSGEKPYVCIHCQRQFADPGALQRHVRIHTGEKPCQCVMCGKAFTQASSLIAHVRQHTGEKPYVC
ERCGKRFVQSSQLANHIRHHDNIRPHKCSVCSKAFVNVGDLSKHIIIHTGEKPYLCDKCGRGFNRVDNLR
SHVKTVHQGKAGIKILEPEEGSEVSVVTVDDMVTLATEALAATAVTQLTVVPVGAAVTADETEVLKAEIS
KAVKQVQEEDPNTHILYACDSCGDKFLDANSLAQHVRIHTAQALVMFQTDADFYQQYGPGGTWPAGQVLQ
AGELVFRPRDGAEGQPALAETSPTAPECPPPAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH