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Report for CCDS16436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16436.1 Public Mus musculus 2 Zfp408 23 108 98 CCDS HistoryNCBI Gene:381410Re-query CCDS DB by CCDS ID:16436.1Re-query CCDS DB by GeneID:381410See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111333.1 ENSMUSP00000106965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111333.1Link to Ensembl Protein Viewer:ENSMUSP00000106965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111333Re-query CCDS DB by Protein ID:ENSMUSP00000106965
Original member NCBI NM_001033451.3 NP_001028623.1 Updated not alive Link to Nucleotide Sequence:NM_001033451.3Link to Protein Sequence:NP_001028623.1Re-query CCDS DB by Nucleotide ID:NM_001033451Re-query CCDS DB by Protein ID:NP_001028623
Current member NCBI NM_001033451.4 NP_001028623.1 Accepted alive Link to Nucleotide Sequence:NM_001033451.4Link to Protein Sequence:NP_001028623.1Re-query CCDS DB by Nucleotide ID:NM_001033451Re-query CCDS DB by Protein ID:NP_001028623Link to BLAST:NP_001028623.1

Chromosomal Locations for CCDS 16436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91644975 91646473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91647596 91647846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91648016 91648077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91649151 91649171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGAAGACACCGCACGAGGAGGACTTCTCGTTAGCCCCGTGCGGAGCCATCTGTCCCCGGCAGCAAAGTT
CCACTTGGACCAGTTTGGTGCAGGAGGGAAGACTGCAGAGTGATGGCAATGCGTCCTTGGTCTGGATCAG
GGAGAAGCTACACCTGCAGGTGGACCAGACTATACTGCCAGGCTTTGAGTTGCTGCTGCGCCCACAGTCT
CCGCAGAAGAGTCTAAGTGTCCTGCACCCCAAGCTGGAGGAAGAAGTAGCTGAGACAGGAGAGGCGTCTG
CTACACAGGAAGAGGTGGCCTCCCCGCAAGAGGATTCAGCAGGGTTTTGCACAGATCCTGGTCACGAGTC
ATCCCATAGTATCCAAGAAGACAATATGCTAGTCTCTGAATCTGTGACCAAAACCGAAGAGCAACTTTTC
AAGGATAGCCAACCCATTGGCCTGTTGCTTCACGATGACAGCATGGATAAACAGTGCCTACCACAGACTC
CACCTGAGCCTCAGAGCACCTCAGCTGCCCAGAAGAGCCCAGAGAGCAGTGAAGCCGGTTTATTTCCTCC
TGAGGGTGCCCAGGTGGAGACCTGCCCGGCCAAGCAGTTAGATGTCCCCAGCAGTCAGTGCCCGTCTATA
GCCCAGACCTCAGAGCCTGGAACCCAGCTCCCTGACCTGTCTGGGCTGCTCTGCAGCCCTCTGGACCCAG
CAGGAAGCTCCTCAAAGCTGGGCCGACGCTACCGGTGTGGGGAGTGTAGCAAGGCATTCCTACAGCTGTG
CCATCTGAAGAAGCACGCGTTTGTGCACACAGACCACAAGCCTTTCCTGTGCACCGAGTGTGGCAAGAGC
TACAGCTCTGAGGAAAGCTTCAAAGGCCACATGCTGGGCCACCGTGGTGTACGGCCCTTCCCTTGCTCTC
AGTGTGACAAGGCCTATGGTACCCGCAGAGACCTCAGGGAACATCAGGTGGTCCACTCAGGTGCCCGGCC
CTTTGTGTGTGAGCAATGCGGCAAAACCTTTGCCCGCCGACCTTCCCTGCGGCTACACCGAAAGACCCAC
CAGATGCCAGATGCCCCTTCACCATGCCCATGCCCAGTGTGTGGACGGCTCCTGGCCACCCGGGGTTCCC
TGCGGAATCACATGAGGCTCCACACTGGTGAGAAACCCTACCTGTGCCCCCACTGTGGCCAAGCATTCCG
CCAGCGGGGCAACCTCCAAGGACACTTGCGGCTACACACAGGAGAGCGCCCCTACCAGTGCCCACATTGT
GCCAATACTTACCCCCAGCTGCCTGAACTGCGGCGCCATCTCATCTCCCACACTGGAGAGGCCTACCTGT
GCCCCGTGTGTGGGAAGGCCCTGCGAGACCCACATACACTCCGTGCTCATGAGCGCCTACACTCAGGGGA
GAGGCCCTTTCGCTGTCCCCAGTGTGACCGAGCTTACACACTGGCCACCAAGTTGCGCCGCCACCTCAAG
TCCCACATGACAGACAAGCCATACCAGTGCCCCATCTGTGGCATGGGCTATGTTCTCCCTCACAGCCTCA
AGCGGCACCAGCTCAGTCACCAGTGTGGGGTTTCATCCAGCCCTTCTCTGCCTCCTGCTGCCTCTGAGCC
CCCTATGGTGCTCCTCCAGAGTGAGCCGGAACTGCTGGACACTTGTAGCCAACAGGAAGTGCCCCCAGGT
GAGGGTATTGTGGAGGTCACCATCTCTGAAAGCCAGGAAAAGTGCTTTATAGTACCAGAGCAGCCAGCCC
CTAGCCCCAGCCTGGTCCTGATCCACAAGGACGTGGGCTTTCGTGGCTGGGCCGAGGTGGTAGAAGCAGA
AGCAGGCACCTGA

Translation (610 aa):
MKTPHEEDFSLAPCGAICPRQQSSTWTSLVQEGRLQSDGNASLVWIREKLHLQVDQTILPGFELLLRPQS
PQKSLSVLHPKLEEEVAETGEASATQEEVASPQEDSAGFCTDPGHESSHSIQEDNMLVSESVTKTEEQLF
KDSQPIGLLLHDDSMDKQCLPQTPPEPQSTSAAQKSPESSEAGLFPPEGAQVETCPAKQLDVPSSQCPSI
AQTSEPGTQLPDLSGLLCSPLDPAGSSSKLGRRYRCGECSKAFLQLCHLKKHAFVHTDHKPFLCTECGKS
YSSEESFKGHMLGHRGVRPFPCSQCDKAYGTRRDLREHQVVHSGARPFVCEQCGKTFARRPSLRLHRKTH
QMPDAPSPCPCPVCGRLLATRGSLRNHMRLHTGEKPYLCPHCGQAFRQRGNLQGHLRLHTGERPYQCPHC
ANTYPQLPELRRHLISHTGEAYLCPVCGKALRDPHTLRAHERLHSGERPFRCPQCDRAYTLATKLRRHLK
SHMTDKPYQCPICGMGYVLPHSLKRHQLSHQCGVSSSPSLPPAASEPPMVLLQSEPELLDTCSQQEVPPG
EGIVEVTISESQEKCFIVPEQPAPSPSLVLIHKDVGFRGWAEVVEAEAGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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