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Report for CCDS16164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16164.1 Public Mus musculus 2 Zfp385b 23 108 98 CCDS HistoryNCBI Gene:241494Re-query CCDS DB by CCDS ID:16164.1Re-query CCDS DB by GeneID:241494See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090766.11 ENSMUSP00000088271.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090766.11Link to Ensembl Protein Viewer:ENSMUSP00000088271.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090766Re-query CCDS DB by Protein ID:ENSMUSP00000088271
Original member Current member EBI ENSMUST00000111831.7 ENSMUSP00000107462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111831.7Link to Ensembl Protein Viewer:ENSMUSP00000107462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111831Re-query CCDS DB by Protein ID:ENSMUSP00000107462
Original member Current member NCBI NM_178723.6 NP_848838.2 Accepted alive Link to Nucleotide Sequence:NM_178723.6Link to Protein Sequence:NP_848838.2Re-query CCDS DB by Nucleotide ID:NM_178723Re-query CCDS DB by Protein ID:NP_848838Link to BLAST:NP_848838.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848838.2 482 Q8BXJ8-1 482 100% 0 0

Chromosomal Locations for CCDS 16164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77411925 77412140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77413954 77414055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77414573 77414751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77415730 77415975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77450151 77450313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77476735 77476845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77503540 77503682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77719451 77719739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGAACATGGCAACCTTCCTCCGGGGCTTTGAAGAAAAGGGGTTAAAGAACGACAGGCCTGGGGACCAGT
TCAGCAAGGAGAAGAAGAAGATTCTCTTCTCCTTTTGTGAAGTGTGCAACATCCAGCTAAACTCCGCTGC
TCAGGCCCAGGTCCATTATGACGGCAAATCCCATCGAAAGCGGGTCAAGCAGCTGAGCGATGGCCAGCCC
CCACCCCCGGTCCAGGGCTCAGTGCCACTGCTGGCTGGCCCTTGCCCTTGCCCTGGGCCTGGCCCGAACA
CCAGCACAGGCAGCGCATGCCACACCACTACCCTTCCTGCCCTCGTGCGCACACCCACCCTGATGATGCA
GCCTTCGCTGGACATCAAACCGTTCATGTCTTTTCCAGTGGACAGTAGCTCTGCCGTGGGGCTCTTTCCA
AACTTTAACACAATGGACCCTGTGCAGAAAGCAGTCATTAACCACACATTTGGAGTCTCCATTCCCCCGA
AGAAGAAACAAGTTATTTCCTGTAACGTCTGTCAGCTTCGCTTTAACTCGGATAGCCAGGCCGAGGCCCA
CTACAAAGGAAGTAAACATGCCAAGAAGGTCAAAGCTCTAGAGGCAACGAAAAATAAACCCAAAATGGTT
CCTTCCAAGGACAGCGCAAAGGCTAATCCCAGCTGCTCCATCAGGCCAGGCACAGGCGACAGCTCTGACA
AATCAGAAGACAAAGGGAAGATAAAAGCCACCAGTTCCAGTCAGCCCTCAGGCTCCGAAGGAGGCTCCTT
TCTCCTCAAATCTGGCACAACACCCCTGCCACTTGGAGCCATCGCTTCTCCCTCCAAGAGCACAAACGGC
GCTCCAGGGTCTGTTGCTGAGTCAGAAGAAGAAAAAGCCAAAAAATTACTCTACTGCTCACTATGCAAGG
TGGCTGTGAACTCCCTGTCACAGCTGGAGGCTCACAACACAGGATCTAAACACAAGACCATGGTTGAGGC
TCGTAATGGAGCTGGTCCAATTAAGTCCTATCCAAGACCTGGGTCAAGATTAAAGGTGCAGAACGGCAGT
AAGGGCTCAGGACTACAGAACAAAATGTTTCATTGTGAGATCTGTGATGTTCACGTGAACTCAGAGATTC
AACTCAAACAGCACATTTCAAGCCGAAGGCATAAAGACCGCGTGGCAGGAAAACCGCTGAAGCCGAAATA
CAGCCCCTACAACAAGCTGCAGCGGAGCCCAAGCATCTTAGCTGCAAAGCTTGCATTCCAGAAAGATCTG
ATGAAGCCTCTGGCCCCTACGTTCCTGTCTTCACCCCTGGCGGCCGCAGCCGTGTCCTCTGCGCTGTCAC
TGCCACCTCGGCCATCCGCCTCTCTGTTCCAGGCTGCAGCCATCCCTCCTGCGCTGCTGAGGCCTGGCCA
CGGGCCCATCCGGGCCACGCCCGCCTCCATCCTCTTTGCCCCTTACTAA

Translation (482 aa):
MNMATFLRGFEEKGLKNDRPGDQFSKEKKKILFSFCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLSDGQP
PPPVQGSVPLLAGPCPCPGPGPNTSTGSACHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFP
NFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMV
PSKDSAKANPSCSIRPGTGDSSDKSEDKGKIKATSSSQPSGSEGGSFLLKSGTTPLPLGAIASPSKSTNG
APGSVAESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSRLKVQNGS
KGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYSPYNKLQRSPSILAAKLAFQKDL
MKPLAPTFLSSPLAAAAVSSALSLPPRPSASLFQAAAIPPALLRPGHGPIRATPASILFAPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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