NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16115.1 Public Mus musculus 2 Metap1d 23 108 98 CCDS HistoryNCBI Gene:66559Re-query CCDS DB by CCDS ID:16115.1Re-query CCDS DB by GeneID:66559See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037210.8 ENSMUSP00000048190.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037210.8Link to Ensembl Protein Viewer:ENSMUSP00000048190.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037210Re-query CCDS DB by Protein ID:ENSMUSP00000048190
Original member NCBI NM_025633.3 NP_079909.1 Updated not alive Link to Nucleotide Sequence:NM_025633.3Link to Protein Sequence:NP_079909.1Re-query CCDS DB by Nucleotide ID:NM_025633Re-query CCDS DB by Protein ID:NP_079909
Current member NCBI NM_025633.4 NP_079909.1 Accepted alive Link to Nucleotide Sequence:NM_025633.4Link to Protein Sequence:NP_079909.1Re-query CCDS DB by Nucleotide ID:NM_025633Re-query CCDS DB by Protein ID:NP_079909Link to BLAST:NP_079909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079909.1 335 Q9CPW9-1 335 100% 0 0

Chromosomal Locations for CCDS 16115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 71453359 71453398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71506785 71506942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71509741 71509890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71511412 71511560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71512126 71512168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71515637 71515800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71522533 71522630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71523802 71523849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71524717 71524795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71524883 71524961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCGGCGCCCATCGGCGTCCCCCTGCTCGTCCGTGGAGGTTGTCAGAGAATTCTGTCTTCGCCACTCA
ATCATATCTACTTACACAAGCGGTCAGGCAGTCAACAAAGAAGACATTTCTTTTTCTGGAGACAAAGGGA
TATCTCCCACAGTGTGGTTTCACCGGCTGCCGTCTCTCCCGCACATCCTGTCCCCAAGCGCATAAAGAAG
CCAGACTACGTGACGACAGGCATTGTGCCGGACTGGGGAGACAGCATAGAAGTGAAGGATGAAGATCAGA
TTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGAGACACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAGGT
TGACATGACAACTGAAGAGATAGATGCGCTTGTTCATTGGGAAATCATCAGGCATGACGCATATCCCTCA
CCTCTGGGCTATGGACGCTTTCCAAAATCTGTTTGCACCTCTGTAAACAACGTGCTCTGTCATGGCATTC
CTGACAGCCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACGGTCTATTACAATGGCTACCA
TGGAGACACCTCTGAAACCTTTCTGGTGGGCAATGTGGATGAAAGTGGTAAAAAGTTAGTGGAGGTTGCC
AGGAGGTGTAGAGATGAAGCGATTGCAGCCTGCAGAGCTGGGGCCCCCTTCTCTGTAATTGGAAACACAA
TCAGCCGCATAACTCATCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGGATAGGATCATA
CTTTCATGGACACCCAGAAATTTGGCATCATGCAAATGACAATGATCTGCCCATGGAGGAGGGCATGGCT
TTCACCATAGAGCCAATCATCACTGAAGGTTCCCCAGAATTTAAAGTCCTTGAGGACGCATGGACCGTGG
TCTCCCTAGACAACCAAAGGTCTGCGCAGTTCGAGCACACAGTCCTCATCACGCCAAGGGGAGTGGAGAT
ACTGACCAAACTGCCACAAGAAGCCTGA

Translation (335 aa):
MAAPIGVPLLVRGGCQRILSSPLNHIYLHKRSGSQQRRHFFFWRQRDISHSVVSPAAVSPAHPVPKRIKK
PDYVTTGIVPDWGDSIEVKDEDQIQGLREACRLARHVLLLAGKSLKVDMTTEEIDALVHWEIIRHDAYPS
PLGYGRFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDESGKKLVEVA
RRCRDEAIAACRAGAPFSVIGNTISRITHQNGLQVCPHFVGHGIGSYFHGHPEIWHHANDNDLPMEEGMA
FTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITPRGVEILTKLPQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH