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Report for CCDS15637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15637.1 Public Mus musculus 1 Lamb3 23 108 98 CCDS HistoryNCBI Gene:16780Re-query CCDS DB by CCDS ID:15637.1Re-query CCDS DB by GeneID:16780See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016315.15 ENSMUSP00000016315.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016315.15Link to Ensembl Protein Viewer:ENSMUSP00000016315.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000016315Re-query CCDS DB by Protein ID:ENSMUSP00000016315
Original member Current member EBI ENSMUST00000159955.1 ENSMUSP00000123875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159955.1Link to Ensembl Protein Viewer:ENSMUSP00000123875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159955Re-query CCDS DB by Protein ID:ENSMUSP00000123875
Original member Current member EBI ENSMUST00000194677.5 ENSMUSP00000142053.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194677.5Link to Ensembl Protein Viewer:ENSMUSP00000142053.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194677Re-query CCDS DB by Protein ID:ENSMUSP00000142053
Original member Current member NCBI NM_001277928.1 NP_001264857.1 Accepted alive Link to Nucleotide Sequence:NM_001277928.1Link to Protein Sequence:NP_001264857.1Re-query CCDS DB by Nucleotide ID:NM_001277928Re-query CCDS DB by Protein ID:NP_001264857Link to BLAST:NP_001264857.1
Original member Current member NCBI NM_008484.2 NP_032510.2 Accepted alive Link to Nucleotide Sequence:NM_008484.2Link to Protein Sequence:NP_032510.2Re-query CCDS DB by Nucleotide ID:NM_008484Re-query CCDS DB by Protein ID:NP_032510Link to BLAST:NP_032510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264857.1 1168 Q61087 1168 100% 0 0
NP_032510.2 1168 Q61087 1168 100% 0 0

Chromosomal Locations for CCDS 15637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 193303520 193303547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193304436 193304590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193320432 193320546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193321053 193321126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193323737 193323928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193325560 193325623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193325889 193326073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193327894 193328014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193328635 193328823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193330040 193330195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193330748 193330944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193331296 193331407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193332123 193332501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193334180 193334340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193334416 193334633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193334849 193335046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193335357 193335501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193338806 193339013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193339389 193339530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193339885 193340061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193340748 193340901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193343374 193343510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3507 nt):
ATGACAGCATTTTTCCTCCTGTGGCTTGCCTTGCCTGGCTTCCTGTGTGCCCAGCAAGCCTGCTCCCGAG
GGGCCTGTTATCCACCTGTGGGGGACTTGCTCATTGGAAGGACTCAGCTTCTTCGAGCCTCATCTACCTG
TGGATTGACCAAACCTGAGACCTATTGCACCCAATATGGACAGTGGCAGATGAAATGCTGCAAGTGTGAC
TCCAGGCTGCCTCGAAATTACAACAGTCACCGAGTGGAGAATGTCGCATCGTCTTCAGGCCCCATGCGCT
GGTGGCAGTCACAGAATGATGTGAGCCCTGTCTCTCTGCAGCTGGACCTAGACAAGAGGATGCAGCTTCA
GGACATCATGATGGATTTTAAGGGTCTCACACCAGCTGGCATGTTGATTGAGCGCTCTTCTGACTTTGGC
AAGACATGGAGGGTGTACCAGTACCTGGCGACAGACTGTGCCAGCACCTTTCCCCAGGTCCACCAGGGCC
AGCCCAAGAACTGGCAGGACGTCCGGTGCCGGCCCTTGTCCCAGAGGCCTAATGGGCATCTGACTGGGGG
AAAGGTCCAACTTAACCTTATGGATTTAGCATCAGCTATCCCTGCATCTCAAAGTAAAAAGATTCAAGAA
CTTGGGGACATCACAAACTTGAGAGTCAACTTCACCAAGCTGGCCCCTGTGCCCCAGAGGGGCTCCTATC
CACCCAGCGCCTACTTTGCAGTGTCACAGCTACGTCTACAGGGGAGTTGCTTCTGTCACGGACATGCCGA
CCGCTGTGCCCCTAATCCTGGAGGTTCTACCACTGCTGTGCAGGTCAACAATGTCTGTGTCTGCCAGCAT
AACACAGCTGGCCCCAATTGTGACCGCTGTGCCCCTTTCTACAACAACCGTCCATGGAGACCTGCAGAGG
GCCAGGACACCCACGAGTGCCAAAGGTGTGACTGCAATGGGCACTCAGAGACCTGCCACTTCGACCCAGC
TGTGTTTGCTGCCAGCCAGGGGACAAATGGAGGTGTGTGTGACAACTGCCGGGACCACACCGAGGGCAAG
AACTGCGAGCGCTGTCAGCTACACTATTTCCGGAATAGACGACCCAGCGCTCCCATTCATGAGACTTGTA
TTCCCTGTGAGTGTGATCCAGATGGAGCAGTCCAGGGAGCTCCCTGTGACCGACTGACGGGCCAGTGTGT
GTGCAAAGAGTACGTGCAAGGAGAGCGCTGCGACCTTTGCAAGCCTGGCTTCACCGGGCTCACCTTCGCC
AACCCGAAGGGCTGCCATGCCTGTGACTGCAGTATCTTAGGTGCCCGGAAAGATATGCCTTGTGAGGAGG
AAACCGGACGCTGCTTGTGTCTGCCCAATGTAGTGGGCCCCAAATGTGACCAGTGTGCCCCTTCCCACTG
GAAGCTGGCCAGCGGCCTGGGCTGCGAGCCCTGTGCCTGTGACCCTCGCAACTCCCTAAGCTCCCAGTGC
AACCAGTTTACAGGACAGTGTCCTTGTCGGGAAGGGTTTGGCGGCCTCACGTGTAGTTCTGCAGCCATCC
GCCAGTGTCCTGACCAGACCTATGGACACGTGGCCACAGGGTGCCGAGCTTGTGACTGTGACTTCAGAGG
AACAGAGGGTCCTGGCTGTGACAAAGCCTCAGGCCGTTGCCTCTGCCGCCCTGGCTTTACCGGGCCCCGC
TGTGACCAATGCCAACGAGGTCACTGTGACCGCTACCCAGTATGTGTGGCCTGCCACTCCTGCTTCCAGG
CCTATGACACAGACCTCCAGGAGCAAGCTCGACGCCTTCACAGTCTCCGTAATGCCACCGAAGGCCTGTG
GACAGGGACAGGTCTGGAAGACCATGGCCTGGCTTCTCGGTTGCTAGATGCCAAGAGCAAGATTGAGCAG
ATCAGACAGATTCTGGAAGGCACTTCTGTCACAGAGCAGGATGTGGCTCAGGTGGCCAATGGCATCTTGT
CTATCAGGAGAACTCTTCAGGGCCTGCCGCTGGACCTGCCCTTAGAGGAGGAGATGGAATCCTTCTCTGG
AGACCTGGGGAATCTAGACAGAAGCTTCAGTCGGCTCCTCCTTATGTACCGAAGCAAGAAGGAGCAATTT
GAGAAGCTAAGCAGTGAAGACCCTTCAGGAGCCTTCCGCATGCTGACCATGGCTTATGAGCAGTCCTCCC
GGGCTGCACAGCAAGTGTCTGACAGTTCTAGCCTGCTGAGCCAGTTGAGGGACAGTCGCAGGGAAGCAGA
GGGCCTGGAGAGACAGGCTGGAGGAGGAGGCACCGGAGGAGCTCAGCTCATGGCCCTGCGCCTAGAAATG
GCTTCGCTGCCTGACTTGACACCCACCATCAACAAGCTTTGTGGCAGGTCTAGGCAGACAGCCTGTACTC
CAGGAGATTGCCCTGGAGAGCTGTGTCCTCAGGACAATGGTACAGCTTGTGGCTCTCACTGCAGGGGAGC
CCTGCCCAGAGCCAAAGGGGCCTTCCACATGGCAGGGCGGGTAGCTGAGCAGCTACGAAACTTCAACACC
CAGCTCCAGCAGACCAGGCAAATGATCAGGGCAGCCGAGGAAGCAGCATCAAGGGTCCAAGCCGATGCCC
AGCGCCTTGAGACCCAGGTGAGTACCAGCCGCTTGCTGATGGAGGAAGATGTCCAGCGCACACGGCTTCT
CATCCAACAGGTCCGGGGCTTTCTCACAGATCCTGACACAGATGCAGCCACCATCCAACAGGTCAGCGAG
GCAGTGCTGGCTCTCTGGCTGCCCACAGACTCAGCCACAGTGCTGCGCAAGATGAAAGAGATCCAGGCCA
TTGCGGCCAGGCTCCCTAATGTGGACTCAGTGCTATCCCAGACCAAACAAGACATCGCACGGGCCCGCAG
GCTCCAGGCTGAGGCTGAGCAGGCCAGAAGCCGAGCCCACGCTGTGGAAGGGCAGGTAGATGATGTGGTC
GGGAACCTTCGGCAGGGCACCGTGGCTCTGCAGGAAGCTCAGGACACAATGCAGGGTACTGGCCGCTCTC
TTCGGCTCATCCAGGAAAGGGTTGGTGAGGTTCAGCAGGTCCTTGTACCAGCTGAAAGGCTGGTGAAAGG
CATGAAGGAACAGATGAGTGGATTCTGGGCACGGATGAAGGAGCTTCGCCGTCAGGCCCAGGAGGAGCAG
GCCCAGGCAATGCAGGCCCGGCAGCTTGCAGAGGGTGCCAGCCAGCAGGCAATGAATGCCCAGGAGGGCT
TTAAGAGACTTAAGCAAAAGTATACAGAGTTGAAGGACCGGCTGGGTCAGAGTCCTGTGCTGGGCGAGCA
AGGCAATCGAATCCTGAGCATCAAGATGGAGGCAGAGGAGCTCTTTGGGGAGACCATGGAAATGATGGAC
AAAATGAAAGACATGGAGTCAGAGCTGCTTCGAGGGAGTCAGGCTATCATGCTGCGCTCTGCAGACCTGT
CGGGGCTGGAGAAGCGTGTGGAGCAGATCCGCAGTTACATCAATGGGCGAGTGCTCTACTATGCCACCTG
CAAGTGA

Translation (1168 aa):
MTAFFLLWLALPGFLCAQQACSRGACYPPVGDLLIGRTQLLRASSTCGLTKPETYCTQYGQWQMKCCKCD
SRLPRNYNSHRVENVASSSGPMRWWQSQNDVSPVSLQLDLDKRMQLQDIMMDFKGLTPAGMLIERSSDFG
KTWRVYQYLATDCASTFPQVHQGQPKNWQDVRCRPLSQRPNGHLTGGKVQLNLMDLASAIPASQSKKIQE
LGDITNLRVNFTKLAPVPQRGSYPPSAYFAVSQLRLQGSCFCHGHADRCAPNPGGSTTAVQVNNVCVCQH
NTAGPNCDRCAPFYNNRPWRPAEGQDTHECQRCDCNGHSETCHFDPAVFAASQGTNGGVCDNCRDHTEGK
NCERCQLHYFRNRRPSAPIHETCIPCECDPDGAVQGAPCDRLTGQCVCKEYVQGERCDLCKPGFTGLTFA
NPKGCHACDCSILGARKDMPCEEETGRCLCLPNVVGPKCDQCAPSHWKLASGLGCEPCACDPRNSLSSQC
NQFTGQCPCREGFGGLTCSSAAIRQCPDQTYGHVATGCRACDCDFRGTEGPGCDKASGRCLCRPGFTGPR
CDQCQRGHCDRYPVCVACHSCFQAYDTDLQEQARRLHSLRNATEGLWTGTGLEDHGLASRLLDAKSKIEQ
IRQILEGTSVTEQDVAQVANGILSIRRTLQGLPLDLPLEEEMESFSGDLGNLDRSFSRLLLMYRSKKEQF
EKLSSEDPSGAFRMLTMAYEQSSRAAQQVSDSSSLLSQLRDSRREAEGLERQAGGGGTGGAQLMALRLEM
ASLPDLTPTINKLCGRSRQTACTPGDCPGELCPQDNGTACGSHCRGALPRAKGAFHMAGRVAEQLRNFNT
QLQQTRQMIRAAEEAASRVQADAQRLETQVSTSRLLMEEDVQRTRLLIQQVRGFLTDPDTDAATIQQVSE
AVLALWLPTDSATVLRKMKEIQAIAARLPNVDSVLSQTKQDIARARRLQAEAEQARSRAHAVEGQVDDVV
GNLRQGTVALQEAQDTMQGTGRSLRLIQERVGEVQQVLVPAERLVKGMKEQMSGFWARMKELRRQAQEEQ
AQAMQARQLAEGASQQAMNAQEGFKRLKQKYTELKDRLGQSPVLGEQGNRILSIKMEAEELFGETMEMMD
KMKDMESELLRGSQAIMLRSADLSGLEKRVEQIRSYINGRVLYYATCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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