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Report for CCDS15635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15635.1 Public Mus musculus 1 Hsd11b1 23 108 98 CCDS HistoryNCBI Gene:15483Re-query CCDS DB by CCDS ID:15635.1Re-query CCDS DB by GeneID:15483See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016338.14 ENSMUSP00000016338.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016338.14Link to Ensembl Protein Viewer:ENSMUSP00000016338.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000016338Re-query CCDS DB by Protein ID:ENSMUSP00000016338
Original member Current member EBI ENSMUST00000161737.7 ENSMUSP00000125620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161737.7Link to Ensembl Protein Viewer:ENSMUSP00000125620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161737Re-query CCDS DB by Protein ID:ENSMUSP00000125620
Original member NCBI NM_001044751.1 NP_001038216.1 Updated not alive Link to Nucleotide Sequence:NM_001044751.1Link to Protein Sequence:NP_001038216.1Re-query CCDS DB by Nucleotide ID:NM_001044751Re-query CCDS DB by Protein ID:NP_001038216
Current member NCBI NM_001044751.2 NP_001038216.1 Accepted alive Link to Nucleotide Sequence:NM_001044751.2Link to Protein Sequence:NP_001038216.1Re-query CCDS DB by Nucleotide ID:NM_001044751Re-query CCDS DB by Protein ID:NP_001038216Link to BLAST:NP_001038216.1
Original member NCBI NM_008288.2 NP_032314.2 Updated not alive Link to Nucleotide Sequence:NM_008288.2Link to Protein Sequence:NP_032314.2Re-query CCDS DB by Nucleotide ID:NM_008288Re-query CCDS DB by Protein ID:NP_032314
Current member NCBI NM_008288.3 NP_032314.2 Accepted alive Link to Nucleotide Sequence:NM_008288.3Link to Protein Sequence:NP_032314.2Re-query CCDS DB by Nucleotide ID:NM_008288Re-query CCDS DB by Protein ID:NP_032314Link to BLAST:NP_032314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038216.1 292 P50172 292 100% 0 0
NP_032314.2 292 P50172 292 100% 0 0

Chromosomal Locations for CCDS 15635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 193222011 193222228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193223622 193223765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193240231 193240416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193240527 193240638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193241332 193241462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193242175 193242262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCAGTTATGAAAAATTACCTCCTCCCGATCCTGGTGCTCTTCCTGGCCTACTACTACTATTCTACAA
ATGAAGAGTTCAGACCAGAAATGCTCCAGGGAAAGAAAGTGATTGTCACTGGGGCCAGCAAAGGGATTGG
AAGAGAAATGGCATATCATCTGTCAAAAATGGGAGCCCATGTGGTATTGACTGCCAGGTCGGAGGAAGGT
CTCCAGAAGGTAGTGTCTCGCTGCCTTGAACTCGGAGCAGCCTCTGCTCACTACATTGCTGGCACTATGG
AAGACATGACATTTGCGGAGCAATTTATTGTCAAGGCGGGAAAGCTCATGGGCGGACTGGACATGCTTAT
TCTAAACCACATCACTCAGACCTCGCTGTCTCTCTTCCATGACGACATCCACTCTGTGCGAAGAGTCATG
GAGGTCAACTTCCTCAGCTACGTGGTCATGAGCACAGCCGCCTTGCCCATGCTGAAGCAGAGCAATGGCA
GCATTGCCGTCATCTCCTCCTTGGCTGGGAAAATGACCCAGCCTATGATTGCTCCCTACTCTGCAAGCAA
GTTTGCTCTGGATGGGTTCTTTTCCACCATTAGAACAGAACTCTACATAACCAAGGTCAACGTGTCCATC
ACTCTCTGTGTCCTTGGCCTCATAGACACAGAAACAGCTATGAAGGAAATCTCTGGGATAATTAACGCCC
AAGCTTCTCCCAAGGAGGAGTGCGCCCTGGAGATCATCAAAGGCACAGCTCTACGCAAAAGCGAGGTGTA
CTATGACAAATCGCCTTTGACTCCAATCCTGCTTGGGAACCCAGGAAGGAAGATCATGGAATTTTTTTCA
TTACGATATTATAATAAGGACATGTTTGTAAGTAACTAG

Translation (292 aa):
MAVMKNYLLPILVLFLAYYYYSTNEEFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEG
LQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVM
EVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSI
TLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFS
LRYYNKDMFVSN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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