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Report for CCDS15626.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15626.3 Public Mus musculus 1 Rd3 23 108 98 CCDS HistoryNCBI Gene:74023Re-query CCDS DB by CCDS ID:15626.3Re-query CCDS DB by GeneID:74023See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15626.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180463.2 ENSMUSP00000138049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180463.2Link to Ensembl Protein Viewer:ENSMUSP00000138049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180463Re-query CCDS DB by Protein ID:ENSMUSP00000138049
Original member NCBI NM_023727.4 NP_076216.3 Updated not alive Link to Nucleotide Sequence:NM_023727.4Link to Protein Sequence:NP_076216.3Re-query CCDS DB by Nucleotide ID:NM_023727Re-query CCDS DB by Protein ID:NP_076216
Current member NCBI NM_023727.5 NP_076216.3 Accepted alive Link to Nucleotide Sequence:NM_023727.5Link to Protein Sequence:NP_076216.3Re-query CCDS DB by Nucleotide ID:NM_023727Re-query CCDS DB by Protein ID:NP_076216Link to BLAST:NP_076216.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076216.3 195 Q8BRE0 195 100% 0 0

Chromosomal Locations for CCDS 15626.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191983266 191983561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191985212 191985503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGTCCCTCATCCCGTGGCTCCGGTGGAACGACACCCCTCCCCGGCTCTCGGCCCGGACCCCGGCCGAGA
TGGTGCTGGAGACGCTCATGATGGAGCTGGCTGGGCAGATGAGAGAGGTGGAGCGACAACAGAGGGAGCG
TCGCAGCGCAGTCAGGAAGATCTGCACTGGTGTGGACTACAGCTGGTTGGCAAACACGCCCAGGCCCACC
TATGACATCAGCCCTGGTGAGCGGCTGCAGTTGGAGGATGTATGTGCCAAGATCCACCCATCCTACTGTG
GGCCTGCCATCCTCAGGTTCAGGCAGCTGCTGGCTGAACGAGAGCCCGAGGTGCAGGAGGTGGCGCGGCT
GTTCCGCTCCGTGTTGCAGGAGGCCCTGGAGAAGATGAAGCAGGAGGAGGAGGCCCATAAGCTGACACGT
CAGTGGAGCTTGAGGCCCCGCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCATCGCACCCTTTGCCA
GTGACATCCGAACCATCTCGGAGGATGTGGAGCGCGATGCGCCACCCCCGCCGCGCACCTGGAGCATGCC
GGAGTTCAGGGCGCCCCAGGCCGACTGA

Translation (195 aa):
MSLIPWLRWNDTPPRLSARTPAEMVLETLMMELAGQMREVERQQRERRSAVRKICTGVDYSWLANTPRPT
YDISPGERLQLEDVCAKIHPSYCGPAILRFRQLLAEREPEVQEVARLFRSVLQEALEKMKQEEEAHKLTR
QWSLRPRGSLSSFKTRARIAPFASDIRTISEDVERDAPPPPRTWSMPEFRAPQAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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