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Report for CCDS1532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1532.1 Public Homo sapiens 1 TAF1A 24 110 108 CCDS HistoryNCBI Gene:9015Re-query CCDS DB by CCDS ID:1532.1Re-query CCDS DB by GeneID:9015See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1532.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366890.5 ENSP00000355856.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366890.5Link to Ensembl Protein Viewer:ENSP00000355856.1Re-query CCDS DB by Nucleotide ID:ENST00000366890Re-query CCDS DB by Protein ID:ENSP00000355856
Original member Current member NCBI NM_139352.2 NP_647603.1 Accepted alive Link to Nucleotide Sequence:NM_139352.2Link to Protein Sequence:NP_647603.1Re-query CCDS DB by Nucleotide ID:NM_139352Re-query CCDS DB by Protein ID:NP_647603Link to BLAST:NP_647603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647603.1 336 Q15573-2 336 100% 0 0

Chromosomal Locations for CCDS 1532.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 222558660 222558772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222561364 222561518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222563173 222563296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222564059 222564125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222569510 222569668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222570535 222570665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222577445 222577643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222579759 222579821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGAGAGTTTCAATACTTTTGCTAACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCT
TACAACATGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGA
GACATGGAGACATGGTGAAAATACGTCTTCCCGGGAAATATTAATCAACCTTATTCAGGCCTATAAAGGG
CTTTTACAGTATTATACCTGGTCTGAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTT
ACAATGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAATATTTCTGCATTGATTAA
AATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGAT
GGAGCCCAAGAGGTACTCACCAATTATGCATATGATGAAAAGTTTCCATCAAATCCAAATGCCCATATCT
ACTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAATTGATAAGTGTGCTTAAGATTTTGTA
TCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAA
CACCGTAAACTGGGGTTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATGCACTAAGAATATAACTG
CTTGGAAATACTTGGCAAAATATCTGAAAAATATCTTAATGGGAAACCACCTTGCGTGGGTTCAAGAAGA
GTGGAACTCCAGGAAAAACTGGTGGCCAGGCTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAG
GAAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGTTTACTGTTAGGAAAAGGTTGTAGATATT
TCCGGTATATTTTAAAGCAAGATCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAA
AAAATACAGTATTGTAAATCCAAGACTCTGA

Translation (336 aa):
MESFNTFANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKG
LLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRD
GAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWK
EDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYSIVNPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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