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Report for CCDS15288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15288.1 Public Mus musculus 1 Cntn2 23 108 98 CCDS HistoryNCBI Gene:21367Re-query CCDS DB by CCDS ID:15288.1Re-query CCDS DB by GeneID:21367See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086521.10 ENSMUSP00000083707.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086521.10Link to Ensembl Protein Viewer:ENSMUSP00000083707.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086521Re-query CCDS DB by Protein ID:ENSMUSP00000083707
Original member Current member NCBI NM_177129.5 NP_796103.2 Accepted alive Link to Nucleotide Sequence:NM_177129.5Link to Protein Sequence:NP_796103.2Re-query CCDS DB by Nucleotide ID:NM_177129Re-query CCDS DB by Protein ID:NP_796103Link to BLAST:NP_796103.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796103.2 1040 Q61330 1040 100% 0 0

Chromosomal Locations for CCDS 15288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 132515534 132515637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132516021 132516189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132516524 132516636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132516901 132517087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132518297 132518409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132518662 132518896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132519169 132519239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132521139 132521288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132521721 132521879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132522333 132522453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132522935 132523110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132523358 132523485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132523593 132523743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132525307 132525436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132525818 132525954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132526288 132526463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132527695 132527794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132528076 132528285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132528612 132528707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132528910 132529085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132529187 132529331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132533657 132533732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGGGAGCACCGGCCAGGAAAAGGGCAAGCTTGCTGCTGCTGCTGCTGGCCACAATGGCTCTGGTCTCCT
CTCCAGGATGGAGTTTTTCCCAGGGAACCCCAGCTACCTTTGGACCCGTCTTTGAAGAGCAACCTGTTGG
CCTGCTATTCCCAGAGGAGTCTGCAGAGGATCAGGTGACACTGGCGTGCCGTGCCCGAGCTAGCCCTCCA
GCCACCTATAGGTGGAAGATGAACGGCACAGAGATGAACCTGGAACCTGGTTCCCGTCACCAGCTGATGG
GGGGCAACCTGGTCATCATGAGTCCCACCAAAGCACAGGATGCTGGTGTCTACCAGTGCCTAGCCTCTAA
CCCAGTAGGCACTGTCGTCAGCAAGGAAGCTGTCCTCCGCTTCGGCTTTCTACAGGAATTCTCCAAGGAG
GAGAGAGACCCCGTGAAAACCCACGAGGGCTGGGGGGTGATGCTGCCCTGTAACCCACCTGCCCACTACC
CAGGTTTGTCCTACCGCTGGCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGATGGGCGTCACTTCGT
GTCCCAGACCACAGGGAACCTGTACATCGCCCGCACCAATGCCTCGGACCTGGGCAACTACTCTTGCCTG
GCTACCAGCCACCTGGACTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTG
AAGATCCTCGACTCTTTGCTCCCAGTATCAAAGCCCGGTTCCCCCCAGAGACGTACGCACTGGTTGGGCA
GCAGGTCACCCTGGAGTGCTTTGCCTTTGGGAACCCTGTTCCCAGGATCAAGTGGCGCAAAGTGGATGGT
TCCTTGTCCCCTCAGTGGGGCACAGCAGAGCCCACCCTGCAGATCCCCAGTGTTAGCTTTGAAGATGAGG
GTACCTATGAATGTGAGGCAGAGAACTCCAAGGGCCGTGACACCGTCCAGGGACGCATCATTGTGCAAGC
TCAGCCTGAGTGGCTAAAGGTGATCTCAGACACAGAAGCCGACATTGGTTCCAACTTACGTTGGGGCTGT
GCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGGAACCTCTGGCCTCCCAGAACC
GGGTGGAGGTCTTGGCTGGGGACCTGCGATTCTCTAAGCTGAACCTGGAGGACTCCGGCATGTACCAGTG
TGTGGCAGAAAACAAGCATGGCACCATCTATGCCAGTGCTGAGCTGGCTGTACAAGCTCTGGCCCCAGAC
TTCAGGCAGAACCCTGTGAGGCGGCTGATCCCTGCAGCCCGAGGGGGAGAGATCAGTATCCCGTGCCAGC
CCCGTGCGGCTCCAAAAGCTACAATACTGTGGAGCAAGGGTACTGAGATTCTGGGGAACAGTACCAGAGT
GACTGTCACTTTGGACGGCACCTTGATTATCAGAAACATCAGTCGATCGGATGAAGGCAAATATACCTGC
TTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCTGTGCGAGATGCAACGAAGATCA
CGCTAGCTCCTTCGAGTGCTGACATCAATGTGGGTGATAACCTGACCCTACAGTGCCACGCCTCGCATGA
CCCCACTATGGACCTCACGTTCACCTGGACCCTGGATGACTTCCCTGTTGACTTTGATAAGCCTGGAGGT
CACTACCGGAGAGCCAGTGTGAAGGAGACCATTGGGGACCTGACTATCCTGAATGCCCAGCTACGCCACG
GAGGGACATACACATGCATGGCCCAGACAGTGGTGGATGGTGCATCCAAGGAGGCCACAGTCCTGGTCCG
AGGTCCCCCAGGTCCTCCTGGGGGTGTGGTGGTGAGAGACATTGGAGACACTACTGTTCAGCTTAGCTGG
AGTCGTGGCTTTGACAATCACAGCCCCATTGCCAAGTACACCCTGCAAGCGCGGACTCCACCCTCAGGGA
AATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGCAACGCGGAAACTGCCCAGGTGCTGGGGCT
CATGCCTTGGATGGACTATGAGTTTCGGGTTTCAGCTAGCAACATCTTGGGCACTGGGGAGCCCAGCGGC
CCCTCCAGCAGAATCCGCACTAAGGAAGCAGTCCCCTCTGTGGCACCATCTGGACTCAGTGGAGGGGGAG
GAGCCCCTGGAGAGCTTACCATCAACTGGACTCCCATGTCACGAGAGTACCAGAATGGAGACGGCTTCGG
CTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCCGGGTGCCCGGCGCTGATACC
CAGTACTTCGTCTACAGCAACGATAGCATCCATCCCTACACACCCTTTGAGGTCAAGATCCGAAGCTACA
ATCGCCGGGGGGATGGGCCCGAGAGCCTCACTGCCATCGTGTACTCAGCAGAGGAAGAGCCCAAGGTGGC
CCCTGCCAAGGTCTGGGCCAAGGGTTCCTCATCCTCAGAGATGAACGTAAGCTGGGAGCCTGTGCTACAA
GACATGAACGGCATCCTCCTGGGATATGAGATTCGCTACTGGAAAGCCGGGGACAAAGAAGCTGCCGCTG
ACCGAGTGAGGACGGCAGGGCTAGACTCCAGTGCCCGAGTCACCGGCCTGTACCCCAACACCAAGTACCA
TGTAACTGTGAGGGCCTACAACAGGGCTGGCACCGGACCAGCTAGCCCTTCAGCTGATGCCATGACCATG
AAGCCCCCACCACGGCGACCTCCTGGCAACATCTCCTGGACTTTCTCAAGTTCCAGCCTCAGCCTTAAGT
GGGACCCTGTGGTTCCTCTCCGAAATGAATCTACAGTCACTGGCTACAAGATGTTGTATCAGAATGACCT
GCAGCCAACTCCTATGCTCCACCTCACCAGCAAGAACTGGATAGAAATACCAGTACCTGAAGACATTGGT
CACGCTCTGGTGCAGATTCGAACCACGGGGCCTGGAGGGGATGGGATACCAGCCGAAGTCCACATTGTGA
GAAATGGAGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATCCTGGCCCGGTGTTCTC
CTGCATGGTTATACTGATGCTCGCCGGATGCCAGAGGCTCTGA

Translation (1040 aa):
MGAPARKRASLLLLLLATMALVSSPGWSFSQGTPATFGPVFEEQPVGLLFPEESAEDQVTLACRARASPP
ATYRWKMNGTEMNLEPGSRHQLMGGNLVIMSPTKAQDAGVYQCLASNPVGTVVSKEAVLRFGFLQEFSKE
ERDPVKTHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCL
ATSHLDFSTKSVFSKFAQLNLAAEDPRLFAPSIKARFPPETYALVGQQVTLECFAFGNPVPRIKWRKVDG
SLSPQWGTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGC
AAAGKPRPMVRWLRNGEPLASQNRVEVLAGDLRFSKLNLEDSGMYQCVAENKHGTIYASAELAVQALAPD
FRQNPVRRLIPAARGGEISIPCQPRAAPKATILWSKGTEILGNSTRVTVTLDGTLIIRNISRSDEGKYTC
FAENFMGKANSTGILSVRDATKITLAPSSADINVGDNLTLQCHASHDPTMDLTFTWTLDDFPVDFDKPGG
HYRRASVKETIGDLTILNAQLRHGGTYTCMAQTVVDGASKEATVLVRGPPGPPGGVVVRDIGDTTVQLSW
SRGFDNHSPIAKYTLQARTPPSGKWKQVRTNPVNIEGNAETAQVLGLMPWMDYEFRVSASNILGTGEPSG
PSSRIRTKEAVPSVAPSGLSGGGGAPGELTINWTPMSREYQNGDGFGYLLSFRRQGSSSWQTARVPGADT
QYFVYSNDSIHPYTPFEVKIRSYNRRGDGPESLTAIVYSAEEEPKVAPAKVWAKGSSSSEMNVSWEPVLQ
DMNGILLGYEIRYWKAGDKEAAADRVRTAGLDSSARVTGLYPNTKYHVTVRAYNRAGTGPASPSADAMTM
KPPPRRPPGNISWTFSSSSLSLKWDPVVPLRNESTVTGYKMLYQNDLQPTPMLHLTSKNWIEIPVPEDIG
HALVQIRTTGPGGDGIPAEVHIVRNGGTSMMVESSAVRPAHPGPVFSCMVILMLAGCQRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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