NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15159.1 Public Mus musculus 1 Scly 23 108 98 CCDS HistoryNCBI Gene:50880Re-query CCDS DB by CCDS ID:15159.1Re-query CCDS DB by GeneID:50880See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027532.12 ENSMUSP00000027532.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027532.12Link to Ensembl Protein Viewer:ENSMUSP00000027532.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027532Re-query CCDS DB by Protein ID:ENSMUSP00000027532
Original member NCBI NM_016717.3 NP_057926.2 Updated not alive Link to Nucleotide Sequence:NM_016717.3Link to Protein Sequence:NP_057926.2Re-query CCDS DB by Nucleotide ID:NM_016717Re-query CCDS DB by Protein ID:NP_057926
Current member NCBI NM_016717.4 NP_057926.2 Accepted alive Link to Nucleotide Sequence:NM_016717.4Link to Protein Sequence:NP_057926.2Re-query CCDS DB by Nucleotide ID:NM_016717Re-query CCDS DB by Protein ID:NP_057926Link to BLAST:NP_057926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057926.2 432 Q9JLI6-1 432 99.7685% 0 1

Chromosomal Locations for CCDS 15159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91298396 91298448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91300528 91300640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91302769 91302869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91305274 91305454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91308314 91308441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91308651 91308815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91309797 91309903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91315489 91315525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91317064 91317147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91317592 91317691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91319038 91319113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91320077 91320230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGACGCGGCGCGAAATGGCGCGCTGGGCAGTGTGGAGAGCCTACCCGACAGGAAGGTCTATATGGACT
ATAATGCCACCACACCTCTAGAGCCCGAAGTCATCCAGGCTGTGACAGAGGCCATGAAGGAAGCCTGGGG
AAACCCCAGCAGCTCCTATGTGTCAGGTAGGAAGGCCAAGGACATTATAAATGCAGCTCGAGCGAGCCTG
GCCAAGATGATAGGTGGAAAGCCCCAGGACATCATCTTCACTTCTGGGGGCACCGAGTCAAATAATTTAG
TAATCCACTCTATGGTAAGATGCTTCCATGAACAGCAGACCCTGAAGGGGAACATGGTTGACCAGCACAG
CCCAGAAGAGGGGACCAGGCCCCATTTTATCACTTGCACAGTGGAACACGACTCCATCCGGCTGCCCCTG
GAGCACCTGGTGGAAAATCAAATGGCAGAGGTCACTTTTGTCCCAGTGTCGAAGGTGAATGGGCAGGCAG
AGGTCGAGGATATCCTGGCGGCTGTCCGTCCCACCACATGCCTTGTGACCATCATGCTGGCCAATAATGA
GACCGGCGTCATCATGCCTGTCTCCGAGATCAGTCGGCGAATTAAAGCCCTGAACCAGATCCGGGCTGCC
TCGGGGCTGCCCCGAGTCCTGGTGCACACAGACGCTGCTCAGGCACTGGGGAAGAGGCGAGTGGATGTCG
AAGACCTGGGCGTGGACTTCCTGACCATCGTGGGACATAAGTTCTACGGCCCCAGGATCGGTGCTCTGTA
TGTACGAGGGGTCGGTAAACTTACCCCCCTGTACCCCATGCTGTTTGGAGGTGGACAAGAGTGGAATTTC
AGGCCAGGGACCGAGAACACGCCCATGATTGCTGGCCTTGGGAAGGCTGCTGATCTGGTGAGCGAGAACT
GCGAGACTTATGAGGCCCACATGAGAGACATCCGAGATTACCTGGAGGAGAGGCTGGAGGCTGAGTTTGG
TAAGAGAATCCATTTGAACAGCCGGTTTCCAGGAGTGGAGAGGCTTCCAAACACCTGCAACTTTTCCATC
CAGGGGTCCCAGCTTCAAGGGTACACGGTCCTTGCACAGTGCCGGACACTGCTGGCCAGTGTGGGAGCAT
CATGCCACTCAAATCACGAGGACCGGCCATCCCCAGTGCTGCTGAGCTGCGGCATTCCTGTGGACGTGGC
CCGGAATGCAGTCCGGCTCAGCGTGGGCCGCGGTACCACCAGGGCTGATGTGGATCTCATCGTACAGGAC
CTGAAGCAGGCCGTGGCCCAACTGGAAGGGCGGCTCTAG

Translation (432 aa):
MDAARNGALGSVESLPDRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVSGRKAKDIINAARASL
AKMIGGKPQDIIFTSGGTESNNLVIHSMVRCFHEQQTLKGNMVDQHSPEEGTRPHFITCTVEHDSIRLPL
EHLVENQMAEVTFVPVSKVNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNQIRAA
SGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQEWNF
RPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSI
QGSQLQGYTVLAQCRTLLASVGASCHSNHEDRPSPVLLSCGIPVDVARNAVRLSVGRGTTRADVDLIVQD
LKQAVAQLEGRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH