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Report for CCDS14901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14901.1 Reviewed, update pending Mus musculus 1 Chst10 23 108 98 CCDS HistoryNCBI Gene:98388Re-query CCDS DB by CCDS ID:14901.1Re-query CCDS DB by GeneID:98388See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 14901.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 14901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027249.11 ENSMUSP00000027249.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027249.11Link to Ensembl Protein Viewer:ENSMUSP00000027249.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027249Re-query CCDS DB by Protein ID:ENSMUSP00000027249
Original member NCBI NM_145142.2 NP_660124.2 Updated not alive Link to Nucleotide Sequence:NM_145142.2Link to Protein Sequence:NP_660124.2Re-query CCDS DB by Nucleotide ID:NM_145142Re-query CCDS DB by Protein ID:NP_660124
NCBI NM_145142.3 NP_660124.3 Updated not alive Link to Nucleotide Sequence:NM_145142.3Link to Protein Sequence:NP_660124.3Re-query CCDS DB by Nucleotide ID:NM_145142Re-query CCDS DB by Protein ID:NP_660124
Current member NCBI NM_145142.4 NP_660124.3 Pending alive Link to Nucleotide Sequence:NM_145142.4Link to Protein Sequence:NP_660124.3Re-query CCDS DB by Nucleotide ID:NM_145142Re-query CCDS DB by Protein ID:NP_660124Link to BLAST:NP_660124.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660124.3 356 Q6PGK7-1 356 100% 0 0

Chromosomal Locations for CCDS 14901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38865498 38866035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38867981 38868086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38871601 38871835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38873949 38874040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38884350 38884481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38895937 38895958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGAAAATGTGAACCCATCAGGAAGGATCATCGAATGGCCCCTGTCTGACAACATGCACCATCAGTGGC
TC
CTGCTGGCTGCATGCTTTTGGGTGATTTTCATGTTCATGGTGGCCAGCAAGTTCATCACGTTGACCTT
T
AAGGATCCGGATGGGTATAGTGCCAAACAGGAGTTTGTGTTCCTGACGACCATGCCGGAAGCAGAGAAG
CTA
AGAGGAGAGAAGCATTTTCCTGAAGTCCCGAAGCCAACTGGGAAGATGCTTTCGGACAGCCGTCCTG
AT
CAGCCCCCGGTTTATCTGGAGCGGCTGGAGCTCATTAGAAACACCTGCAAGGAGGAGGCTCTGCGGAA
C
CTCTCACACACCGAGGTCTCGAAGTTCGTCCTGGATCGAATATTTGTCTGTGACAAGCACAAGATTCTT
TTC
TGTCAGACTCCCAAGGTGGGCAACACCCAGTGGAAGAAAGTGCTGATCGTCCTAAATGGAGCATTTT
CT
TCCATTGAAGAGATTCCTGAAAATGTAGTCCATGACCATGAGAAAAATGGCCTTCCACGCCTCTCTTC
C
TTCAGCAAAATAGGAATTCAGAAGCGATTGAAAACATACTTCAAGTTTTTTATTGTGAGAGATCCCTTT
GAA
AGACTGATTTCTGCCTTTAAGGATAAGTTTGTTCACAATCCTCGATTCGAGCCTTGGTACAGGCATG
AG
ATAGCCCCAGGCATTATTAGAAAGTACCGGAAGAACCGGACAGAGACCCGGGGGATCCAGTTTGAAGA
T
TTTGTGCGCTACCTGGGTGATCCAAACCGCAGGTGGTTAGACCTTCAGTTTGGGGACCATATCATCCAC
TGG
GTGACCTACGTTGAACTCTGTGCGCCCTGTGAGATCAAGTACAGTGTGGTCGGACACCATGAGACCC
TG
GAGGCAGATGCCCCGTACATCCTGAAAGAAGCTGGCATAGACCATCTGGTGTCATACCCCACCATCCC
T
CCGGGCATCACCATGTACAACAGAACCAAGGTAGAACAGTACTTCCTGGGCATCAGCAAACGAGACATC
CGG
CGTCTCTATGCCCGCTTTGAAGGGGACTTCAAGCTCTTTGGGTATCAGAAACCAGATTTCTTGCTAA
AT
TAA


Translation (374 aa):
MENVNPSGRIIEWPLSDNMHHQWLLLAACFWVIFMFMVASKFITLTFKDPDGYSAKQEFVFLTTMPEAEK
L
RGEKHFPEVPK
PTGKMLSDSRPDQPPVYLERLELIRNTCKEEALRNLSHTEVSKFVLDRIFVCDKHKIL
F
CQTPKVGNTQWKKVLIVLN
GAFSSIEEIPENVVHDHEKNGLPRLSSFSKIGIQKRLKTYFKFFIVRDPF
E
RLISAFKDKFVHNPRFEPWYRHEIAPGIIRKYRKNRTETRGIQFEDFVRYLGDPNRRWLDLQFGDHIIH
W
VTYVELCAPCEIKYSVVGHHETLEADAPYILKEAGIDHLVSYPTIPPGITMYNRTKVEQYFLGISKRDI
R
RLYARFEGDFKLFGYQKPDFLLN




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