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Report for CCDS14899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14899.1 Public Mus musculus 1 Rev1 23 108 98 CCDS HistoryNCBI Gene:56210Re-query CCDS DB by CCDS ID:14899.1Re-query CCDS DB by GeneID:56210See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027251.11 ENSMUSP00000027251.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027251.11Link to Ensembl Protein Viewer:ENSMUSP00000027251.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027251Re-query CCDS DB by Protein ID:ENSMUSP00000027251
Original member Current member NCBI NM_019570.4 NP_062516.2 Accepted alive Link to Nucleotide Sequence:NM_019570.4Link to Protein Sequence:NP_062516.2Re-query CCDS DB by Nucleotide ID:NM_019570Re-query CCDS DB by Protein ID:NP_062516Link to BLAST:NP_062516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062516.2 1249 Q920Q2 1249 100% 0 0

Chromosomal Locations for CCDS 14899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38053087 38053198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38053616 38053718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38053840 38053996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38054084 38054295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38054745 38054865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38055291 38055524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38056264 38056466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38056717 38056882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38057674 38057776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38059122 38059294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38063115 38063335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38067500 38067619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38071343 38071497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38074315 38074443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38079290 38079398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38083704 38083820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38085545 38085652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38087971 38088674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38092063 38092215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38098853 38099021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38107568 38107694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38108404 38108457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3750 nt):
ATGAGGCGAGGTGGATGGCGGAAGAGAACGGAGAATGATGGCTGGGAAAAATGGGGCGGGTACATGGCTG
CC
AAGGTCCAGAAGCTGGAGGAGCAGTTCCGCACAGATGCTGCTAACCAGAAGGATGGGACGGCGTCTGC
A
ATATTTAGTGGAGTTGCCATCTATGTTAATGGATATACAGATCCTTCTGCGGAGGAATTGAGAAATCTA
ATG
ATGTTGCATGGAGGTCAATACCATGTGTATTATTCTAGATCCAAAACAACACACATTATTGCTACAA
AT
CTTCCTAATGCCAAAATTAAAGAATTAAAGGGGGAAAAAGTAATACGACCAGAATGGATTGTGGAAAG
C
ATCAAAGCTGGGAGACTCTTGTCCTCTGCTCCCTATCAGCTCTACACCAAGCCGTCGGCTGCACAGAAG
AGT
CTCAACTTCAATCCTGTGTGCAAACCTGAGGATCCTGGGCCAGGTCCAAGCAATAGAGCCAAACAGC
TC
AACAACAGGGTAAATCACATAATTAAGAAGATTGAGACAGAAAGTGAAGTGAAAGCAAATGGACTGAG
C
AGCTGGAATGAAGACGGTGTAAATGATGATTTTAGTTTTGAGGATCTGGAACATACATTTCCAGGAAGG
AAA
CAGAATGGAGTAATGCATCCCAGAGATACCGCTGTCATTTTTAATGGACACACCCATAGTTCAAATG
GT
GCCTTAAAGACACAGGATTGCTTGGTGCCTGTGGGCAACAGTGTTGCTAGCAGGCTATCTTTAGACTC
C
ACCCAGGAGGAGAAGAGGGCAGAGAAGAGCAACGCGGACTTCAGAGACTGCACAGTGCAGCACTTGCAA
CAC
AGCACCAGAAGTGCAGATGCTTTGCGGAGTCCACACAGAACTAATTCTCTCTCACCATCTTTGCACA
GT
AACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTCAAGCACAAAAAGCACTTCTGT
T
CTGACTCTTAGTAAAGTAGCGCCTTCAGTGCCATCCAAACCCTCGGACTGCAACTTCATTTCAGATTTC
TAT
TCTCGTTCAAGACTGCATCACATCTCAACATGGAAGTGTGAATTGACTGAGTTTGTCAATACCCTAC
AG
AGACAAAGTAGTGGTATCTTTCCGGGAAGGGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCTCT
T
GTTGTAACTGACACAGGCACTATGTCAGTGTTGAGCTCACCCAGACATCAGAGCTGTGTGATGCACGTT
GAT
ATGGACTGCTTCTTTGTATCAGTGGGTATACGAAATAGACCAGATCTCAAAGGAAAACCAGTGGCTG
TT
ACAAGTAACAGAGGCACGGGAACGGCGCCTTTGCGTCCTGGTGCTAACCCGCAGCTGGAATGGCAGTA
T
TACCAGAATAGAGCCCTGAGAGGAAAAGCAGCAGATATACCAGATTCATCAGTATGGGAGAATCAAGAT
TCT
ACACAAACAAATGGAATTGATTCTGTTCTGTCAAAAGCTGAGATTGCTTCTTGTAGTTATGAAGCCA
G
A
CAAGTTGGCATTAAGAACGGAATGTTTTTTGGATATGCTAAACAGCTGTGTCCTAATCTGCAAGCTGT
T
CCGTATGATTTTCATGCATGCAGGGAAGTTGCCCAGGCAATGTATGAAACACTGGCCAGCTACACACAC
AGC
ATCGAGGCTGTCAGCTGCGATGAAGCACTGATTGACGTCACGGACATCCTTGCAGAGACGAAACTTT
CT
CCTGAGGAGTTTGCAGCTGCCCTCCGTATTGAAATCAAAGACAAGACCAAATGTGCTGCCTCTGTTGG
A
ATTGGTTCTAATATTCTTCTTGCTAGAATGGCAACTAAGAAAGCAAAGCCAGATGGTCAGTACCACCTG
CAG
CCCGACGAGGTAGACGATTTCATCCGAGGGCAGCTCGTCACTAACCTGCCGGGAGTTGGACGTTCAA
TG
GAATCTAAGCTTGCATCTTTGGGGATTAAGACTTGTGGAGATTTGCAGTGTTTGACCATGGCAAAACT
C
CAGAAAGAATTTGGCCCCAAGACAGGGCAGATGCTGTATAGGTTCTGCCGAGGTTTGGATGATAGACCT
GTT
AGAACAGAGAAGGAACGAAAATCTGTTTCAGCCGAGATCAACTATGGAATAAGGTTCACCCAGCCCA
AA
GAAGCAGAAGCTTTCCTTCTGAGTCTTTCAGAAGAAATTCAAAGACGACTTGAAGCTGCTGGCATGAA
G
GGCAAACGCCTGACTCTGAAAATCATGGTGCGGAAGCCAGGGGCCCCTATAGAAACTGCAAAATTTGGA
GGC
CATGGAATTTGTGATAACATCGCCAGGACTGTAACTCTGGACCAGGCAACAGATAGTGCAAAAATAA
TT
GGGAAAGCCACTCTAAACATGTTTCATACAATGAAACTAAATATATCGGATATGAGAGGGGTTGGTAT
T
CAAGTGAATCAGTTGGTTCCTGCTAATTCAAATCTTTCCACATGTTCAAGTCGTCCATCAGCTCAGTCA
AGC
CTCTTCTCTGGTCGGCCACATTCTGTCCGTGATCTCTTCCAACTTCAGAAAGCCAAGAAACCCACAG
AA
GAGGAACACAAGGAAGTATTTCTGGCTGCTGTGGATCTGGAAGTGTCCTCCACCTCTAGAGCTTGTGG
T
TTATTGTCTCCGCTCTCTGCACATCTGGCAGCTAGTGTTAGTCCTGACACTAACAGTGGAGAGTGTTCC
AGA
AAATGGAATGGCCTGCACTCTCCTGTCAGTGGACAGTCACGGCTGAACCTCAGTATAGAGGTCCCAT
CA
CCATCCCAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCCGGGAACAAATAGAACAAGT
T
TGTGCCGCTCAGCAGGGAGAGCCACGTGGAAAGAAGAAAGAACCAGTAAATGGCTGCAGTTCAGGGGTG
TTG
CCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAACCTTGTAATAGTGACAGCA
AG
ATTAGTGTAATTGCCCTTCCAGCATTCTCACAAGTGGACCCTGATGTCTTTGCTGCCCTTCCTGCTGA
G
CTTCAAAAGGAGCTGAAAGCAGCATATGATCAAAGACAAAGGCAGGGAGAGGACACTACTCATCAGCAG
CCA
ACCAGTACATCTGTGCCAAAGAATCCTTTACTTCAGCTAAAGCCACCAGCAATGAAAGACAAGAGGA
AC
AAGAGGAAGAACCTCATTGGTTCTCCCAGAAAGAGTCCTTTGAAAAATAAGCTGCTTAGCAGTCCTGC
A
AAAACTCTGCCAGGGGCATATGGAAGCCCCCAGAAGTTAATGGATGGTTTTCTACAACATGAAGGAATG
GCT
TCAGAGAGACCCCTGGAAGAAGTCTCGGCTTCTACCCCTGGTGCACAGGACCTATCTAGTTTACTGC
CA
GGCCAGAGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTGATGTGAA
G
ACCTTGCTCAAAGAGTGGATCACTACTATCTCAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGA
TAC
TGCACTGACCTCATAGAGGAGAAAGACTTGGAAAAATTGGATCTGGTTATAAAATACATGAAAAGGT
TG
ATGCAGCAGTCGGTGGAGTCTGTATGGAACATGGCGTTTGACTTTATTCTTGACAATGTTCAGGTGGT
T
TTACAGCAGACTTATGGAAGCACACTGAAAGTGACCTGA


Translation (1249 aa):
MRRGGWRKRTENDGWEKWGGYMAAKVQKLEEQFRTDAANQKDGTASAIFSGVAIYVNGYTDPSAEELRNL
M
MLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVE
SIKAGRLLSSAPYQLYTKPSAAQK
S
LNFNPVCKPEDPGPGPSNRAKQLNNR
VNHIIKKIETESEVKANGLSSWNEDGVNDDFSFEDLEHTFPGR
K
QNGVMHPRDTAVIFNGHTHSSNGALKTQDCLVPVGNSVASRLSLDSTQEEKRAEKSNADFRDCTVQHLQ
H
STRSADALRSPHRTNSLSPSLHSNTKINGAHHSTVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDF
Y
SRSRLHHISTWKCELTEFVNTLQRQSSGIFPGREKLKKVKTGRSSLVVTDT
GTMSVLSSPRHQSCVMHV
D
MDCFFVSVGIRNRPDLK
GKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRALRGKAADIPDSSVWENQD
S
TQTNGIDSVLSKAEIASCSYEA
RQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTH
S
IEAVSCDEALIDVTDILAETKLSPEEFAAALRIEIKDKTKCAASVGI
GSNILLARMATKKAKPDGQYHL
Q
PDEVDDFIRGQLVTNLP
GVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRP
V
RTEKERKSVSAEINYGIRFTQ
PKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFG
G
HGICDNIA
RTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVNQLVPANSNLSTCSSRPSAQS
S
LFSGRPHSVRDLFQLQKAKKPTEEEHKE
VFLAAVDLEVSSTSRACGLLSPLSAHLAASVSPDTNSGECS
R
KWNGLHSPVSGQSRLNLSIEVPSPSQ
IDQSVLEALPLDLREQIEQVCAAQQGEPRGKKKEPVNGCSSGV
L
PHPVGTVLLQIPEPQEPCNSDSKISVIALPAFSQ
VDPDVFAALPAELQKELKAAYDQRQRQGEDTTHQQ
P
TSTS
VPKNPLLQLKPPAMKDKRNKRKNLIGSPRKSPLKNKLLSSPAKTLPGAYGSPQKLMDGFLQHEGM
A
SERPL
EEVSASTPGAQDLSSLLPGQSSCFRPAAPNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVR
Y
CTDLIEEKDLEKLDLVIKYMK
RLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser