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Report for CCDS14873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14873.1 Public Mus musculus 1 Fam168b 23 108 98 CCDS HistoryNCBI Gene:214469Re-query CCDS DB by CCDS ID:14873.1Re-query CCDS DB by GeneID:214469See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047534.11 ENSMUSP00000042212.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047534.11Link to Ensembl Protein Viewer:ENSMUSP00000042212.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047534Re-query CCDS DB by Protein ID:ENSMUSP00000042212
Original member NCBI NM_174997.2 NP_778162.1 Updated not alive Link to Nucleotide Sequence:NM_174997.2Link to Protein Sequence:NP_778162.1Re-query CCDS DB by Nucleotide ID:NM_174997Re-query CCDS DB by Protein ID:NP_778162
Current member NCBI NM_174997.3 NP_778162.1 Accepted alive Link to Nucleotide Sequence:NM_174997.3Link to Protein Sequence:NP_778162.1Re-query CCDS DB by Nucleotide ID:NM_174997Re-query CCDS DB by Protein ID:NP_778162Link to BLAST:NP_778162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778162.1 194 Q80XQ8 194 100% 0 0

Chromosomal Locations for CCDS 14873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34818014 34818126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34819592 34819769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34819867 34820009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34828767 34828847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34836733 34836802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGAATCCTGTTTATAGCCCTGGGTCTTCTGGCGTTCCCTATGCAAATGCCAAAGGAATTGGATATCCAG
CTGGTTTTCCTGTGGGCTATGCAGCAGCACCTGCCTATTCTCCTAACATGTACCCTGGAGCGAATCCTAC
CTTCCAAACAGGCTACACTCCTGGCACACCTTACAAAGTGTCCTGTTCCCCAACCAGCGGAGCTGTTCCA
CCATACTCCTCTTCCCCCAATCCTTACCAGACGGCTGTGTACCCAGTGAGAAGTGCCTACCCCCAGCAGA
GTCCATACGCCCAGCAAGGCACGTACTACACACAACCTCTGTATGCAGCACCTCCTCACGTCATTCACCA
CACCACGGTGGTGCAGCCCAATGGCATGCCAGCAACAGTCTACCCTGCTCCCATCCCTCCTCCTAGAGGC
AGCGGGGTCACCATGGGCATGGTTGCTGGGACCACGATGGCCATGTCAGCAGGTACTCTGCTGACTGCTC
ATTCTCCAACTCCTGTAGCCCCTCACCCGGTCACTGTCCCCACATACCGAGCCCCAGGAACACCCACCTA
CAGCTATGTGCCCCCACAGTGGTGA

Translation (194 aa):
MNPVYSPGSSGVPYANAKGIGYPAGFPVGYAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVP
PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPPPRG
SGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYVPPQW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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