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Report for CCDS14731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14731.1 Public Homo sapiens X SSR4 24 110 108 CCDS HistoryNCBI Gene:6748Re-query CCDS DB by CCDS ID:14731.1Re-query CCDS DB by GeneID:6748See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14731.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320857.7 ENSP00000317331.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320857.7Link to Ensembl Protein Viewer:ENSP00000317331.3Re-query CCDS DB by Nucleotide ID:ENST00000320857Re-query CCDS DB by Protein ID:ENSP00000317331
Original member Current member EBI ENST00000370086.8 ENSP00000359103.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370086.8Link to Ensembl Protein Viewer:ENSP00000359103.3Re-query CCDS DB by Nucleotide ID:ENST00000370086Re-query CCDS DB by Protein ID:ENSP00000359103
Original member Current member EBI ENST00000370087.5 ENSP00000359104.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370087.5Link to Ensembl Protein Viewer:ENSP00000359104.1Re-query CCDS DB by Nucleotide ID:ENST00000370087Re-query CCDS DB by Protein ID:ENSP00000359104
Original member Current member NCBI NM_006280.3 NP_006271.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006280.3Link to Protein Sequence:NP_006271.1Re-query CCDS DB by Nucleotide ID:NM_006280Re-query CCDS DB by Protein ID:NP_006271Link to BLAST:NP_006271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006271.1 173 P51571 173 100% 0 0

Chromosomal Locations for CCDS 14731.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153794688 153794754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153796434 153796552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153797458 153797532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153797725 153797814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153798071 153798136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153798329 153798433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCGGCGATGGCATCTCTCGGCGCCCTGGCGCTGCTCCTGCTGTCCAGCCTCTCCCGCTGCTCAGCCG
AGGCCTGCCTGGAGCCCCAGATCACCCCTTCCTACTACACCACTTCTGACGCTGTCATTTCCACTGAGAC
CGTCTTCATTGTGGAGATCTCCCTGACATGCAAGAACAGGGTCCAGAACATGGCTCTCTATGCTGACGTC
GGTGGAAAACAATTCCCTGTCACTCGAGGCCAGGATGTGGGGCGTTATCAGGTGTCCTGGAGCCTGGACC
ACAAGAGCGCCCACGCAGGCACCTATGAGGTTAGATTCTTCGACGAGGAGTCCTACAGCCTCCTCAGGAA
GGCTCAGAGGAATAACGAGGACATTTCCATCATCCCGCCTCTGTTTACAGTCAGCGTGGACCATCGGGGC
ACTTGGAACGGGCCCTGGGTGTCCACTGAGGTGCTGGCTGCGGCGATCGGCCTTGTGATCTACTACTTGG
CCTTCAGTGCGAAGAGCCACATCCAGGCCTGA

Translation (173 aa):
MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADV
GGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRG
TWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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